View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_68 (Length: 347)
Name: NF11538_low_68
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 51070749 - 51070431
Alignment:
| Q |
12 |
atgaattgacgagtaccaaaaaatgtttgaattcctggtattggccataacttcaacccacatatgatgcttttcgtaacctggattgtcgagcattatt |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51070749 |
atgaattgacgagtaccaaagaatgtttgaattcctggtattggccataacttcaacccacatatgatgcttttcgtaacctggattgtcgagcattatt |
51070650 |
T |
|
| Q |
112 |
aagatagtaagattgtcaggccctcccaaaatgtggacaaataaactatgtcggtttcatggatgattaaatattctattctatcatgggcgtcacaatt |
211 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51070649 |
aagatagtaagattgtcaggccctcccaaaaagtggacaaataaactatgtcggtttcatggatgattaaatattatattctatcatgggcgtcacaatt |
51070550 |
T |
|
| Q |
212 |
acgaaattaggaataggatggcacataaacttattttacgagaaaatacgtacggtatggcgcttatcgtaagcacttgggtcacgatctttgtcaacta |
311 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51070549 |
acgaaattaggaataggatggcacataaacatattttacgagaaaatacgtacggtatggcgcttatcgtaagcacttgggtcacgatctttgtcaacta |
51070450 |
T |
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| Q |
312 |
gtactactactaaatatat |
330 |
Q |
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||||||||||||||||||| |
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| T |
51070449 |
gtactactactaaatatat |
51070431 |
T |
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