View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_71 (Length: 341)
Name: NF11538_low_71
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_71 |
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| [»] scaffold0141 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 8429736 - 8429923
Alignment:
| Q |
19 |
ttttgcaggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8429736 |
ttttgcaggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgt |
8429835 |
T |
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| Q |
119 |
tatgggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
206 |
Q |
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| T |
8429836 |
tatgggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
8429923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 8449675 - 8449488
Alignment:
| Q |
19 |
ttttgcaggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgt |
118 |
Q |
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| T |
8449675 |
ttttgcaggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgt |
8449576 |
T |
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| Q |
119 |
tatgggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
206 |
Q |
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| T |
8449575 |
taagggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagccagaactattgtaacacaat |
8449488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 8429969 - 8430048
Alignment:
| Q |
252 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttg |
331 |
Q |
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| T |
8429969 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttg |
8430048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 8449442 - 8449363
Alignment:
| Q |
252 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttg |
331 |
Q |
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| T |
8449442 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttg |
8449363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 7812 - 7625
Alignment:
| Q |
19 |
ttttgcaggacttcatattgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatatggagttttgtacttgt |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7812 |
ttttgcaggacttcatactgatgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgt |
7713 |
T |
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| Q |
119 |
tatgggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
206 |
Q |
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| T |
7712 |
taagggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
7625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 7579 - 7500
Alignment:
| Q |
252 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttg |
331 |
Q |
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| T |
7579 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttg |
7500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 4238742 - 4238663
Alignment:
| Q |
252 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttg |
331 |
Q |
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| T |
4238742 |
cactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttg |
4238663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 4238991 - 4238913
Alignment:
| Q |
123 |
ggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaac |
201 |
Q |
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|||||||||| ||| ||||||| |||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||| |
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| T |
4238991 |
ggataattagattgggatgcatatgttacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaac |
4238913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 44272624 - 44272572
Alignment:
| Q |
134 |
ttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
186 |
Q |
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| T |
44272624 |
ttgagatgtatatgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
44272572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 33894552 - 33894486
Alignment:
| Q |
126 |
taattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaac |
192 |
Q |
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||||||||||| | ||||||||||||| ||||||||||||||| | |||||||||| |||||||| |
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| T |
33894552 |
taattagcttgtattacatttgttacttgggtagcaagtaactgtttaaaacttaacttgcctaaac |
33894486 |
T |
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