View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_74 (Length: 335)
Name: NF11538_low_74
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 13046706 - 13046463
Alignment:
| Q |
17 |
caataaaaacgtgttctgttgcttgaaaagatagttaataaacatgagagacatcaaaagaaagaaagtttagaaaattgttacctaattatttaatcaa |
116 |
Q |
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| T |
13046706 |
caataaaaacttgttctgttgcttgaaaacatagttaataaacatgagagacatcaaaataaagaaagtttagaaaattgttacctaatta----atcaa |
13046611 |
T |
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| Q |
117 |
ggaaattacggtgatagataagcacaaagataactcattgtgctgaagctatggcaatgaagaagaagctccggtgacggcaaagatccgacgaaggaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
13046610 |
ggaaattacggtgatagataagcacaaagataactcattgcgttgaagctatggcaatgaagaacaagctccggtgacggcaaagatccggcgaaggaaa |
13046511 |
T |
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| Q |
217 |
ggcaaagcggaagaaggtgcatgagatctgcatatttgtttcgaatcg |
264 |
Q |
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| T |
13046510 |
ggcaaagcggaagaaggtgcatgagatctgcatatttgtttcgaatcg |
13046463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 13061996 - 13061753
Alignment:
| Q |
17 |
caataaaaacgtgttctgttgcttgaaaagatagttaataaacatgagagacatcaaaagaaagaaagtttagaaaattgttacctaattatttaatcaa |
116 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
13061996 |
caataaaaacttgttctgttgcttgaaaacatagttaataaacatgagagacatcaaaataaagaaagtttagaaaattgttacctaatta----atcaa |
13061901 |
T |
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| Q |
117 |
ggaaattacggtgatagataagcacaaagataactcattgtgctgaagctatggcaatgaagaagaagctccggtgacggcaaagatccgacgaaggaaa |
216 |
Q |
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| T |
13061900 |
ggaaattacggtgatagataagcacaaagataactcattgtgctgaagctatggcaatgaagcagaagctccggtgacggcaaagatccggcgaaggaaa |
13061801 |
T |
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| Q |
217 |
ggcaaagcggaagaaggtgcatgagatctgcatatttgtttcgaatcg |
264 |
Q |
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| T |
13061800 |
ggcagagcggaagaaggtgcatgagatctgcatatttatttcgaatcg |
13061753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 13052927 - 13052735
Alignment:
| Q |
17 |
caataaaaacgtgttctgttgcttgaaaagatagttaataaacatgagagacatcaaaagaaagaaagtttagaaaattgttacctaattatttaatcaa |
116 |
Q |
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| T |
13052927 |
caataaaaacttgttctgttgcttgaaaacatagttaataaacatgagagacatcaaaataaagaaagtttagaaaattgtt------------------ |
13052846 |
T |
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| Q |
117 |
ggaaattacggtgatagataagcacaaagataactcattgtgctgaagctatggcaatgaagaagaagctccggtgacggcaaagatccgacgaaggaaa |
216 |
Q |
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| T |
13052845 |
gggaattacggtgatagataagcacaaagataactcattgtgctgaagctatggcaatgaagcagaagctcccgtgacggcaaagatccggcgaaggaaa |
13052746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 6477061 - 6476927
Alignment:
| Q |
48 |
tagttaataaacatgagagacatcaaaagaaagaaagtttagaaaattgttacctaattatttaatcaaggaaattacggtgatagataagcacaaagat |
147 |
Q |
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||||||||||||||||||||||| || || ||||||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||| || |
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| T |
6477061 |
tagttaataaacatgagagacattaacttcaa-aaagtttagaaaattattacctaatta----atcaaggaaatcacggtcataagcaagcacaaatat |
6476967 |
T |
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| Q |
148 |
aactcattgtgctgaagctatggcaatgaagaagaagctc |
187 |
Q |
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| T |
6476966 |
aagtcatggtgttgaagttatggcaacgaagcagaagctc |
6476927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 6476921 - 6476882
Alignment:
| Q |
215 |
aaggcaaagcggaagaaggtgcatgagatctgcatatttg |
254 |
Q |
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| T |
6476921 |
aaggcaaagctgaagaaggtgcatgagatctgtatatttg |
6476882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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