View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_80 (Length: 317)
Name: NF11538_low_80
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 2928593 - 2928489
Alignment:
| Q |
210 |
caactaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactatcgaaacagtacaccagagattgacagact |
309 |
Q |
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| T |
2928593 |
caactgactgatactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaaacagtacaccagagattgacagact |
2928494 |
T |
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| Q |
310 |
agttg |
314 |
Q |
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||||| |
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| T |
2928493 |
agttg |
2928489 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 3002717 - 3002773
Alignment:
| Q |
212 |
actaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
268 |
Q |
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| T |
3002717 |
actaactgatactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
235 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
275 |
Q |
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||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
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