View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_81 (Length: 315)
Name: NF11538_low_81
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 4260679 - 4260931
Alignment:
| Q |
47 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260679 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
4260778 |
T |
|
| Q |
147 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaaga |
246 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
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| T |
4260779 |
gcaggaatcgtttagaaccaacgactcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttatttggagaaaa |
4260878 |
T |
|
| Q |
247 |
tggagtaattgtggctgttgaagtgttcagtgaagctttggaaactataaaag |
299 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4260879 |
tggattaattgtggctgttgaaatgttaagtgaagctttggaaactataaaag |
4260931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 291
Target Start/End: Complemental strand, 4255794 - 4255550
Alignment:
| Q |
47 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
146 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| |||||||||| |
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| T |
4255794 |
ttgtcaacatttgtggcatctattgcttatgcattggtatgtagaatgaaagccgagaaaattgagaacaagaatgctttgatgggtttaaatatcgatt |
4255695 |
T |
|
| Q |
147 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaaga |
246 |
Q |
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||||||||||||||| | |||| |||||| |||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||| |
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| T |
4255694 |
gcaggaatcgtttaggagcacctactcctgcaacatattttggaaattgtattggaacatgacttgaaattgttaaaacaggtgagttattgggggaaga |
4255595 |
T |
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| Q |
247 |
tggagtaattgtggctgttgaagtgttcagtgaagctttggaaac |
291 |
Q |
| |
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|||| |||| ||||| ||||||||||| |||||| |||||||||| |
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| T |
4255594 |
tggactaatggtggccgttgaagtgttgagtgaaactttggaaac |
4255550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 48 - 299
Target Start/End: Complemental strand, 4289497 - 4289246
Alignment:
| Q |
48 |
tgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattg |
147 |
Q |
| |
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||||||| ||||| |||||||| |||||||||| |||||| ||| |||||||||| |||||||||||||||||| | |||||| ||||||||| ||||| |
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| T |
4289497 |
tgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaagcagaagaaattgagaacaaaaatgctatgatggttttgaatattgattg |
4289398 |
T |
|
| Q |
148 |
caggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaagat |
247 |
Q |
| |
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| ||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4289397 |
tcgtaatcgtttagatcagccgattcctgcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaaatgagttattgggggaagat |
4289298 |
T |
|
| Q |
248 |
ggagtaattgtggctgttgaagtgttcagtgaagctttggaaactataaaag |
299 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4289297 |
ggactaattgtggctgttgaagtgttgagtgaagctttggaaactataaaag |
4289246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 79 - 299
Target Start/End: Complemental strand, 4298061 - 4297841
Alignment:
| Q |
79 |
attggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgcaggaatcgtttagaaccaccgactccttca |
178 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | || | |||| || |
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| T |
4298061 |
attggtatgtagaatgaaagccgagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattgtcggactcgtttagatcagccaattcctgca |
4297962 |
T |
|
| Q |
179 |
acatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaagatggagtaattgtggctgttgaagtgttcagtg |
278 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| ||||||| | |||||||||||| |||| |
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| T |
4297961 |
acatattttggaaattgtattggaggaagacttgcaattgttaaaacaagtgagttatttggagaaaatggactaattgtagttgttgaagtgttgagtg |
4297862 |
T |
|
| Q |
279 |
aagctttggaaactataaaag |
299 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
4297861 |
aagctttggaaactttaaaag |
4297841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 48 - 299
Target Start/End: Original strand, 4266226 - 4266477
Alignment:
| Q |
48 |
tgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgattg |
147 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||| |||||| ||| ||||| |||| |||||||||||||||||| | |||||| ||||||||| ||||| |
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| T |
4266226 |
tgtcaacttttgttgtatctatagcttatgcatgggtatgcagagtgaaaacagaagaaattgagaacaaaaatgctatgatggttttgaatattgattg |
4266325 |
T |
|
| Q |
148 |
caggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaagat |
247 |
Q |
| |
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| ||||||||||| | |||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
4266326 |
tcgtaatcgtttagatcagccgattcctgcaacatattttggaaattgtattggaggaaaacttgcaattgttaaaacaaatgagttattgggggaagat |
4266425 |
T |
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| Q |
248 |
ggagtaattgtggctgttgaagtgttcagtgaagctttggaaactataaaag |
299 |
Q |
| |
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||| |||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4266426 |
ggactaattgtggctgttgaagtgttgagtgaagctttggaaactttaaaag |
4266477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 117 - 299
Target Start/End: Complemental strand, 4257989 - 4257806
Alignment:
| Q |
117 |
aaaatgttgtgatgggtttgaatatcgattgcaggaa-tcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaa |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4257989 |
aaaatgttgtgatgggtttgactatcgattgcaggaaatcgtttagaacaaccgactcctgcaacatattttggaaattgtattggagcaagacttgcaa |
4257890 |
T |
|
| Q |
216 |
ttgttaaaacaagtgagttattgggggaagatggagtaattgtggctgttgaagtgttcagtgaagctttggaaactataaaag |
299 |
Q |
| |
|
|||||||||||| ||||||||| || ||| ||||| ||||||||| |||||||||||| |||||||||||||||||| |||||| |
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| T |
4257889 |
ttgttaaaacaaatgagttatttggagaaaatggactaattgtggttgttgaagtgttgagtgaagctttggaaactttaaaag |
4257806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 47 - 299
Target Start/End: Complemental strand, 4284799 - 4284547
Alignment:
| Q |
47 |
ttgtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaatatcgatt |
146 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||| | ||||| ||||||||||| | |||||||||||||||||| | |||||| ||||||||| |||| |
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| T |
4284799 |
ttgtcaacttttgttgtatccatagcttatgcctgggtatacagaatgaaagctaaagaaattgagaacaaaaatgctctgatggctttgaatattgatt |
4284700 |
T |
|
| Q |
147 |
gcaggaatcgtttagaaccaccgactccttcaacatattttggaaattgtattggagcaagacttgcaattgttaaaacaagtgagttattgggggaaga |
246 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
4284699 |
gtcggaattgtttagaaccaccgactcctgcaacatattttggaaattgtattggaggaagacttgcaattgttgaaacaagtgagttattggggaaaga |
4284600 |
T |
|
| Q |
247 |
tggagtaattgtggctgttgaagtgttcagtgaagctttggaaactataaaag |
299 |
Q |
| |
|
||| |||| ||||| ||||||||| | ||||||||||||||||| |||||| |
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| T |
4284599 |
tgggctaatcgtggcggttgaagtgctaggtgaagctttggaaactttaaaag |
4284547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 4258388 - 4258319
Alignment:
| Q |
49 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagaatgaaagcagagaaaattgagaacaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
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| T |
4258388 |
gtcaacatttgtggtatctattgcttatgcattggtatgtagactgaaagcagaaaaacttgagaacaaa |
4258319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 4259465 - 4259553
Alignment:
| Q |
58 |
tgtggtatctattgcttatgcattggtatgta-------gaatgaaagcagagaaaattgagaacaaaaatgttgtgatgggtttgaat |
139 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
4259465 |
tgtggtatctattgcttatgcattggtatttactatttagaatgaaagcagagaaaattgagaacaaaaaagttgtgtcgggtttgaat |
4259553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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