View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_84 (Length: 305)
Name: NF11538_low_84
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_84 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 27470338 - 27470181
Alignment:
| Q |
148 |
ttaataaatacttgtgtataatataagaacaacaacaagatattattattaataatattgctgctaaaaatattacaaaaatacactatgaattgatatt |
247 |
Q |
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| T |
27470338 |
ttaataaatacttgtgtataatataagaacaacaagaagatattattattaataatattgcttctaaaaatattacaaaaatacactatgaattgatatt |
27470239 |
T |
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| Q |
248 |
gggttatagggtggacctatcaaatagatgggacctcgtagactaatatttgaaattt |
305 |
Q |
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| T |
27470238 |
gggttatagggtggacctatcaaatagatgggacctagtagactaatatttgaaattt |
27470181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 27470436 - 27470326
Alignment:
| Q |
18 |
gttctttgtcttttattaggctcaaagattgaagaagaagatgatgattgtgagatgatctttattccaatttcaagcaacatttttctactaataaatt |
117 |
Q |
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| T |
27470436 |
gttctttgtcttttattaggctcaaagattgaagaagaagatgatgattgtgagatgatctttattccaatttcaagcaacatttttctactaataaatt |
27470337 |
T |
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| Q |
118 |
aataaatactt |
128 |
Q |
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| T |
27470336 |
aataaatactt |
27470326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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