View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_85 (Length: 299)

Name: NF11538_low_85
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_85
NF11538_low_85
[»] chr1 (1 HSPs)
chr1 (11-299)||(47253992-47254280)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 47254280 - 47253992
Alignment:
Q  11 cacagatactcctgccaatttcaataaatttcatgtgaggttaatcatctcttgctttttctaagaaataggacatctcaagattttcctgtttaactca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254280 cacagatactcctgccaatttcaataaatttcatgtgaggttaatcatctcttgctttttctaagaaataggacatctcaagattttcctgtttaactca 47254181  T
Q  111 actacatgaaacttagtatgtggttagttgtgcgtttaatttccgtcaccaaacgcacgtttatggctcttttactgtaatttaaagaagctccaaaatc 210  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47254180 actacatgaaacttagtatgtgtttagttgtgcgtttaatttccgtcaccaaacgcacgtttatggctcttttactgcaatttaaagaagctccaaaatc 47254081  T
Q  211 aagcttccgtggcaatgtggtttctcaccatggaaatgttaaactcaccgttaaagcaaacacatgcttaatcgagggaactgctttgt 299  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47254080 aagcttctgtggcaatgtggtttttcaccacggaaatgttaaactcaccgttaaagcaaacacatgcttaatcgagggaactgctttgt 47253992  T

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