View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11538_low_86 (Length: 299)
Name: NF11538_low_86
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_86 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 26211207 - 26211394
Alignment:
| Q |
1 |
gtagaggtcgttgagttcgacgccgcagtaaccattgaattcgggaatttcaaagtatgagtatggagaaagaagatcttgaagtgattcgtacagtgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26211207 |
gtagaggtcgttgagttcgacgccgcagtaaccgttgaattcgggaatttcaaagtatgagtatggagaaagaagatcttgaagtgattcgtacagtgaa |
26211306 |
T |
|
| Q |
101 |
tgaagcactgagagaagctgtgttggaagtacgttttggagaactgttagtaaccctaacaatgaccacatttgtgacaatatctcca |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26211307 |
tgaagcactgagagaagctgtgttggaagtacgttttggagaactgttagtaaccctaacaatgaccacatttgtgacaatatctcca |
26211394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 26211437 - 26211486
Alignment:
| Q |
231 |
aataattgaataggaacgtgaatgagaatgtttctttttgaggttgttat |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26211437 |
aataattgaataggaacgtgaatgagaatgtttctttttgaggttgttat |
26211486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University