View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_88 (Length: 297)
Name: NF11538_low_88
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 29449285 - 29449014
Alignment:
| Q |
1 |
atgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagt |
100 |
Q |
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| T |
29449285 |
atgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttgg-------------------gcacaaagggatggcattcaaagt |
29449205 |
T |
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| Q |
101 |
ctacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatattcaagacatgattnnnnnnnngggcgttt |
200 |
Q |
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| T |
29449204 |
ctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatattcaagacatgatt-aaaaaaagggcgttt |
29449106 |
T |
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| Q |
201 |
ttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttct |
292 |
Q |
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| T |
29449105 |
ttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttcttgtattagattttgtgtagtacctttgcttct |
29449014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
| Q |
102 |
tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat |
171 |
Q |
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| T |
29457149 |
tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat |
29457080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
| Q |
197 |
gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt |
244 |
Q |
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| T |
29457031 |
gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt |
29456984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
| Q |
49 |
ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc |
101 |
Q |
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| T |
29461834 |
ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc |
29461783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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