View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_89 (Length: 297)

Name: NF11538_low_89
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_89
NF11538_low_89
[»] scaffold1678 (1 HSPs)
scaffold1678 (20-177)||(1326-1483)
[»] chr2 (33 HSPs)
chr2 (38-219)||(32241712-32241893)
chr2 (20-213)||(32294721-32294914)
chr2 (130-225)||(9731638-9731734)
chr2 (20-109)||(24434049-24434138)
chr2 (141-217)||(42242495-42242571)
chr2 (125-245)||(3857860-3857981)
chr2 (125-225)||(31846479-31846580)
chr2 (126-218)||(43618144-43618236)
chr2 (141-249)||(34342908-34343016)
chr2 (139-225)||(38295036-38295123)
chr2 (130-217)||(40830328-40830415)
chr2 (125-225)||(2307868-2307969)
chr2 (170-225)||(18726975-18727031)
chr2 (125-225)||(41979393-41979494)
chr2 (129-213)||(45160613-45160697)
chr2 (130-213)||(38411938-38412021)
chr2 (125-216)||(43304588-43304679)
chr2 (169-225)||(30851385-30851442)
chr2 (125-178)||(12520314-12520367)
chr2 (176-213)||(15926689-15926726)
chr2 (122-183)||(18899241-18899302)
chr2 (170-225)||(13908637-13908693)
chr2 (125-213)||(33263459-33263547)
chr2 (256-286)||(3339173-3339203)
chr2 (166-212)||(13327673-13327719)
chr2 (125-183)||(35403912-35403970)
chr2 (257-286)||(2755237-2755266)
chr2 (41-78)||(32293245-32293282)
chr2 (259-287)||(52326-52354)
chr2 (259-287)||(21633354-21633382)
chr2 (258-286)||(32661402-32661430)
chr2 (178-214)||(35403978-35404014)
chr2 (258-286)||(36286441-36286469)
[»] chr7 (21 HSPs)
chr7 (126-249)||(27149348-27149472)
chr7 (125-217)||(42611214-42611306)
chr7 (125-225)||(23017671-23017772)
chr7 (139-249)||(33496744-33496855)
chr7 (171-248)||(26201210-26201288)
chr7 (118-225)||(1253836-1253943)
chr7 (154-225)||(14731740-14731812)
chr7 (170-225)||(21024621-21024677)
chr7 (141-217)||(21486833-21486909)
chr7 (124-183)||(37915397-37915456)
chr7 (125-180)||(43172822-43172877)
chr7 (171-217)||(42044191-42044237)
chr7 (142-183)||(5771500-5771541)
chr7 (170-226)||(5771541-5771598)
chr7 (170-225)||(35314084-35314140)
chr7 (255-286)||(40139848-40139879)
chr7 (125-183)||(4639219-4639277)
chr7 (171-213)||(38911041-38911083)
chr7 (146-183)||(14742205-14742242)
chr7 (186-225)||(6269115-6269155)
chr7 (254-286)||(46622548-46622580)
[»] chr1 (38 HSPs)
chr1 (125-225)||(47370882-47370983)
chr1 (129-214)||(51903548-51903633)
chr1 (146-225)||(15928279-15928359)
chr1 (122-225)||(49236316-49236420)
chr1 (124-249)||(27257569-27257695)
chr1 (141-249)||(49971019-49971128)
chr1 (125-225)||(25254229-25254329)
chr1 (125-225)||(48965829-48965930)
chr1 (141-217)||(2292596-2292672)
chr1 (141-249)||(52182683-52182792)
chr1 (125-216)||(11578454-11578545)
chr1 (146-225)||(42303728-42303808)
chr1 (170-225)||(49452417-49452473)
chr1 (125-216)||(1242637-1242728)
chr1 (125-216)||(8148019-8148110)
chr1 (125-225)||(34750991-34751092)
chr1 (130-210)||(3583311-3583391)
chr1 (122-225)||(43855087-43855191)
chr1 (125-183)||(3593980-3594038)
chr1 (125-225)||(34019659-34019760)
chr1 (125-181)||(5208613-5208669)
chr1 (186-248)||(50038026-50038089)
chr1 (125-183)||(4006070-4006128)
chr1 (125-183)||(9174593-9174651)
chr1 (125-183)||(18246882-18246940)
chr1 (125-183)||(41354143-41354201)
chr1 (125-183)||(51107905-51107963)
chr1 (122-178)||(26758317-26758373)
chr1 (181-226)||(19863577-19863623)
chr1 (174-220)||(32759440-32759486)
chr1 (125-202)||(35193745-35193822)
chr1 (258-286)||(15911670-15911698)
chr1 (186-225)||(28403322-28403362)
chr1 (186-225)||(33886366-33886406)
chr1 (186-225)||(33957846-33957886)
chr1 (258-286)||(35580736-35580764)
chr1 (129-217)||(42637479-42637567)
chr1 (255-287)||(46895827-46895859)
[»] chr8 (23 HSPs)
chr8 (125-217)||(42423902-42423994)
chr8 (125-225)||(8029166-8029267)
chr8 (123-244)||(18984999-18985121)
chr8 (125-254)||(35880022-35880152)
chr8 (141-225)||(24082875-24082960)
chr8 (125-225)||(41394551-41394652)
chr8 (125-220)||(3007131-3007226)
chr8 (126-217)||(12737396-12737487)
chr8 (141-217)||(12521735-12521811)
chr8 (170-225)||(26619984-26620040)
chr8 (170-217)||(27974323-27974370)
chr8 (170-217)||(28031592-28031639)
chr8 (126-217)||(44977438-44977529)
chr8 (147-236)||(24067476-24067566)
chr8 (170-218)||(7761208-7761256)
chr8 (186-249)||(33177262-33177326)
chr8 (171-225)||(6387259-6387314)
chr8 (125-183)||(19484915-19484973)
chr8 (170-225)||(27869131-27869187)
chr8 (125-182)||(6387200-6387257)
chr8 (149-248)||(4870502-4870602)
chr8 (255-287)||(35795618-35795650)
chr8 (255-287)||(45308449-45308481)
[»] chr3 (32 HSPs)
chr3 (126-249)||(25050228-25050352)
chr3 (126-242)||(7667403-7667520)
chr3 (126-225)||(24063984-24064083)
chr3 (126-216)||(53836614-53836704)
chr3 (125-225)||(43173581-43173682)
chr3 (146-248)||(21718099-21718201)
chr3 (122-225)||(4962021-4962123)
chr3 (170-225)||(7436915-7436971)
chr3 (127-244)||(27163017-27163135)
chr3 (170-225)||(32766605-32766661)
chr3 (125-213)||(53644751-53644839)
chr3 (123-183)||(8599658-8599718)
chr3 (129-216)||(22488419-22488511)
chr3 (141-217)||(27988265-27988341)
chr3 (170-225)||(33693956-33694012)
chr3 (170-225)||(49459055-49459111)
chr3 (126-213)||(37833388-37833475)
chr3 (126-217)||(45731315-45731406)
chr3 (170-225)||(47466876-47466931)
chr3 (125-183)||(49296816-49296874)
chr3 (141-194)||(21385823-21385876)
chr3 (127-183)||(7436859-7436915)
chr3 (125-181)||(25932150-25932206)
chr3 (125-183)||(33694012-33694070)
chr3 (257-287)||(40989685-40989715)
chr3 (170-216)||(49296770-49296816)
chr3 (170-225)||(9818050-9818105)
chr3 (259-287)||(17258217-17258245)
chr3 (171-246)||(30237957-30238033)
chr3 (255-287)||(40988593-40988625)
chr3 (258-286)||(43001912-43001940)
chr3 (258-286)||(53764573-53764601)
[»] chr6 (16 HSPs)
chr6 (123-225)||(16439379-16439482)
chr6 (125-225)||(31534419-31534520)
chr6 (125-244)||(31975066-31975186)
chr6 (124-218)||(24202799-24202893)
chr6 (146-249)||(28042050-28042151)
chr6 (146-231)||(32567630-32567721)
chr6 (141-214)||(2607630-2607703)
chr6 (170-225)||(31995709-31995765)
chr6 (125-183)||(1462728-1462786)
chr6 (125-183)||(6789083-6789141)
chr6 (125-183)||(10110658-10110716)
chr6 (258-287)||(2173906-2173935)
chr6 (257-286)||(4037035-4037064)
chr6 (254-286)||(11745992-11746024)
chr6 (258-286)||(14169005-14169033)
chr6 (258-286)||(33274230-33274258)
[»] chr4 (33 HSPs)
chr4 (126-234)||(17503227-17503336)
chr4 (129-225)||(12754996-12755093)
chr4 (124-248)||(29509373-29509498)
chr4 (125-254)||(24454223-24454353)
chr4 (125-215)||(24965804-24965894)
chr4 (141-225)||(33141011-33141096)
chr4 (125-217)||(32890573-32890665)
chr4 (122-217)||(46862254-46862349)
chr4 (125-225)||(50517781-50517882)
chr4 (170-249)||(872156-872236)
chr4 (123-225)||(41469634-41469737)
chr4 (124-249)||(55166015-55166141)
chr4 (124-225)||(23170114-23170216)
chr4 (125-211)||(56423416-56423502)
chr4 (141-225)||(8562520-8562605)
chr4 (125-225)||(25014019-25014120)
chr4 (129-225)||(26973009-26973106)
chr4 (125-213)||(40163317-40163405)
chr4 (154-217)||(26490618-26490681)
chr4 (125-216)||(40487063-40487154)
chr4 (125-209)||(6486757-6486841)
chr4 (125-213)||(26449199-26449287)
chr4 (125-216)||(23670917-23671008)
chr4 (167-216)||(29469819-29469868)
chr4 (170-225)||(4511416-4511472)
chr4 (129-213)||(9973423-9973507)
chr4 (170-213)||(54561800-54561843)
chr4 (146-183)||(872236-872273)
chr4 (124-217)||(22480324-22480417)
chr4 (257-286)||(26858341-26858370)
chr4 (258-286)||(2016253-2016281)
chr4 (170-225)||(29965893-29965949)
chr4 (170-249)||(53573698-53573778)
[»] scaffold0116 (1 HSPs)
scaffold0116 (146-246)||(4922-5023)
[»] scaffold0024 (1 HSPs)
scaffold0024 (141-244)||(136191-136295)
[»] chr5 (22 HSPs)
chr5 (130-249)||(21490250-21490369)
chr5 (125-249)||(29759277-29759401)
chr5 (126-216)||(29716216-29716306)
chr5 (157-249)||(16548559-16548652)
chr5 (125-225)||(33892262-33892363)
chr5 (125-217)||(35701920-35702012)
chr5 (124-216)||(5650128-5650220)
chr5 (130-248)||(31914033-31914152)
chr5 (125-216)||(7124228-7124319)
chr5 (125-216)||(21238203-21238294)
chr5 (127-225)||(34910168-34910267)
chr5 (170-225)||(25869344-25869400)
chr5 (186-248)||(3032768-3032831)
chr5 (170-213)||(32236946-32236989)
chr5 (251-286)||(40768175-40768210)
chr5 (125-183)||(37797459-37797517)
chr5 (141-225)||(2674525-2674610)
chr5 (258-287)||(38973326-38973355)
chr5 (258-286)||(12610242-12610270)
chr5 (174-225)||(16801262-16801314)
chr5 (123-183)||(28622506-28622566)
chr5 (259-287)||(38162592-38162620)
[»] scaffold0246 (1 HSPs)
scaffold0246 (125-216)||(25002-25093)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-183)||(16136-16195)
[»] scaffold0286 (1 HSPs)
scaffold0286 (258-287)||(20106-20135)
[»] scaffold0019 (1 HSPs)
scaffold0019 (258-286)||(122617-122645)
[»] scaffold0016 (1 HSPs)
scaffold0016 (259-287)||(199665-199693)


Alignment Details
Target: scaffold1678 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 1326 - 1483
Alignment:
Q  20 ataattactattactgtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326 ataattactattactgtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaatt 1425  T
Q  120 ggaaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1426 ggaaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactc 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 32241712 - 32241893
Alignment:
Q  38 ttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaattggaaccaaggttttacat 137  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||| | |||||||||    
T  32241712 ttggacatgatttattttaatttattttatctaaattagagaaaataaacaaaatgcctgtgtagttaaaaagttcaaaattggaaccgaagttttacat 32241811  T
Q  138 cttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaat 219  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  32241812 cttgagagtttacctcaactcgttttacctaggtaaactcgactcgagaactcgtacgaatttacctaaaattaaaattaat 32241893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 32294914 - 32294721
Alignment:
Q  20 ataattactattactgtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaagttcaaaatt 119  Q
    ||||||||||||| |||  || | |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  32294914 ataattactattattgttgtgaatatgatttattttaatttcttttatcttaattagaaaaaagaaacaaaatgcttgtttagttaaaaagttcaaaatt 32294815  T
Q  120 ggaaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||    
T  32294814 ggaaccaaggttttacatcttaagagtttgcctcaactcgttttgcctaagtaaactcgagttgagaactcgtacgagtttaccttaaattaaa 32294721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 9731734 - 9731638
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9731734 ttttacaactcgagagtttaccttaacttgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 9731638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 24434049 - 24434138
Alignment:
Q  20 ataattactattactgtcttggacatgatttattttaatttcttttatctcaattagaaaaaagaaacaaaatgtttgtgtagttaaaaa 109  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24434049 ataattactatcattgtgttggacatgatttattttaatttattttatctaaattagaaaaaataaacaaaatgtttgtgtagttaaaaa 24434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 42242571 - 42242495
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  42242571 gagagtttacctcaactcgctttgcctaggtaaactcgactcgagaactcgtacgagttgacctaaaattaaaatta 42242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 3857860 - 3857981
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaat-taataaaa 223  Q
    |||||||||||| ||| ||| ||||||| |||||||||||  ||| |||  ||||||||| ||||||||| ||||||||||||||||||||  |||||||    
T  3857860 caaggttttacaacttaagagtttacctcaactcgttttgtttagataagttcgactcgaaaactcgtactagtttacctaaaattaaaatgaaataaaa 3857959  T
Q  224 ttagttatttacaagacatatg 245  Q
    ||  ||||||||| ||||||||    
T  3857960 ttcattatttacatgacatatg 3857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 31846479 - 31846580
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||| |||| || ||||| |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  31846479 caaggttttgcaactcgagagtttatctcaactcattttgcctaggtaaactcgacttgagaactcgtacgagtttacctaaatttaaaattatataaaa 31846578  T
Q  224 tt 225  Q
    ||    
T  31846579 tt 31846580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 43618236 - 43618144
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 218  Q
    ||||||||| | || |||| ||||||| || |  |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43618236 aaggttttataactcgagagtttacctcaatttattttgcttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaa 43618144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 34343016 - 34342908
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaaga 239  Q
    |||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||| ||||||||  |||| |||| ||    
T  34343016 gagagtttacctcaactcgttttgcttaggtaaactcgactcaagaactcgtacgaatttacct-aaattaaaattatataaaatttattatatacatga 34342918  T
Q  240 catatgtaaa 249  Q
    ||||| ||||    
T  34342917 catatataaa 34342908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 38295036 - 38295123
Alignment:
Q  139 ttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||||||  | ||||| ||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  38295036 ttgagaatttatttcaactcattttgtctaggttaactcgactcgagaacttgtacgagtttacctaaaattaaaattatataaaatt 38295123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 40830415 - 40830328
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||| || |||| ||||||| |||||||||||| || ||||||||||||  ||||||||||| | ||||||||||||||||||||    
T  40830415 ttttacaactcgagagtttacctcaactcgttttgcttaagtaaactcgacttcagaactcgtacgaatttacctaaaattaaaatta 40830328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 2307868 - 2307969
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| |||| |||||||  |||||| |||||||||||||||||| ||||| ||| |||||||||| || |||||||| ||||||    
T  2307868 caaggttttacaactcgagagtttatcttaacttattttgcttaggtaaactcgactcgataactcttacgagtttacctacaactaaaattatataaaa 2307967  T
Q  224 tt 225  Q
    ||    
T  2307968 tt 2307969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 18726975 - 18727031
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18726975 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 18727031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 41979494 - 41979393
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| ||||||| ||||||| ||||||||||  |||  |||| |||| ||   ||||||||| |||||||||||||||||||||| ||||||    
T  41979494 caaggttttacaacttgagagtttacctcaactcgttttaactatataaattcgaatcataaactcgtacgagtttacctaaaattaaaattatataaaa 41979395  T
Q  224 tt 225  Q
    ||    
T  41979394 tt 41979393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 45160613 - 45160697
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||| || |||||||||||| ||||| ||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||||    
T  45160613 gttttacaactcgagaatttacctcaactcattttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaa 45160697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 38411938 - 38412021
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||||    
T  38411938 ttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaa 38412021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 43304588 - 43304679
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||| ||| | ||||||||| || ||||||| | ||||||||||| |||| | || |  |||||||||||||||||||||||||    
T  43304588 caaggttttacaacttaacaatttacctcaattcgttttacttaggtaaactcaactcaaaaatttatacaagtttacctaaaattaaaatt 43304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 30851442 - 30851385
Alignment:
Q  169 ggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||| ||||||||    
T  30851442 ggtaaagtcgactcgagaactcgtatgagtttacctaaaattaaaattatataaaatt 30851385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 12520367 - 12520314
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcg 178  Q
    ||||||||| || ||||||| ||||||| |||||||||||||||||||| ||||    
T  12520367 caaggttttgcaacttgagagtttacctcaactcgttttgcctaggtaagctcg 12520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 15926726 - 15926689
Alignment:
Q  176 tcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15926726 tcgactcgagaactcgtacgagtttacctaaaattaaa 15926689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 18899241 - 18899302
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    |||||| ||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  18899241 aaccaaagttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 18899302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 13908693 - 13908637
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  || |||||| |||||||||||||||||||||| ||||||||    
T  13908693 gtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaattatataaaatt 13908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 33263547 - 33263459
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||||||| || |||| ||||||| |||| |||||  ||| |||||||||| |||  ||||| ||| | ||||||||||||||||    
T  33263547 caaggttttacaactcgagagtttacctcaacttgttttagctatgtaaactcgaatcgtaaactcatacgaatttacctaaaattaaa 33263459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 3339203 - 3339173
Alignment:
Q  256 ataaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||||    
T  3339203 ataaggcttaattgcacttttggccccctat 3339173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 13327673 - 13327719
Alignment:
Q  166 ctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaa 212  Q
    |||||||| |||||||||  ||||||||| |||||||||||||||||    
T  13327673 ctaggtaatctcgactcgtaaactcgtacgagtttacctaaaattaa 13327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 35403912 - 35403970
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    |||| |||| || ||||||| ||||||| |||||||||| | |||||||||||||||||    
T  35403912 caagattttgcaacttgagagtttacctcaactcgttttacataggtaaactcgactcg 35403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 2755266 - 2755237
Alignment:
Q  257 taaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||||||||    
T  2755266 taaggcttaattgcacttttggccccctat 2755237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 32293282 - 32293245
Alignment:
Q  41 gacatgatttattttaatttcttttatctcaattagaa 78  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  32293282 gacatgatttattttaatgtcttttatctcaatcagaa 32293245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 52354 - 52326
Alignment:
Q  259 aggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||    
T  52354 aggcttaattgcacttttggccccctatg 52326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 21633382 - 21633354
Alignment:
Q  259 aggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||    
T  21633382 aggcttaattgcacttttggccccctatg 21633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 32661402 - 32661430
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  32661402 aaggcttaattgcacttttggccccctat 32661430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 35403978 - 35404014
Alignment:
Q  178 gactcgagaactcgtacaagtttacctaaaattaaaa 214  Q
    ||||||||||||||| | |||||||||||||||||||    
T  35403978 gactcgagaactcgtgcgagtttacctaaaattaaaa 35404014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 36286469 - 36286441
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  36286469 aaggcttaattgcacttttggccccctat 36286441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 27149472 - 27149348
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 224  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||| ||| ||||    
T  27149472 aaggttttacaacttaagagtttaccttaactcgttttgcctaagtaagctcgactcgagaactcgtacgagtttacctaaaatttaaattaaattaaat 27149373  T
Q  225 tagttatttacaagacatatgtaaa 249  Q
    |  ||||||||| ||||||||||||    
T  27149372 ttattatttacatgacatatgtaaa 27149348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 42611306 - 42611214
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42611306 caaggttttacaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatta 42611214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 23017772 - 23017671
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  23017772 caaggttttacaactcgagagtttacctcaactcgttttgactagataaactcgacttgagaactcgtataagtttacctaaaattaaaattatataaaa 23017673  T
Q  224 tt 225  Q
    ||    
T  23017672 tt 23017671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 249
Target Start/End: Original strand, 33496744 - 33496855
Alignment:
Q  139 ttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaa 237  Q
    |||||||||||||| || |||||||||||| ||||| |||||||   ||||||||| |||||| |||||||||||||| |||||||||  |||||||||     
T  33496744 ttgagaatttacctcaattcgttttgcctaagtaaattcgactcataaactcgtacgagtttatctaaaattaaaattaaataaaatttattatttacat 33496843  T
Q  238 gacatatgtaaa 249  Q
    ||||||||||||    
T  33496844 gacatatgtaaa 33496855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 26201210 - 26201288
Alignment:
Q  171 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatatgtaa 248  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||  ||||||||| |||||||||||    
T  26201210 taaactcgactcgagaactcgtacaagtttaggtaaaattaaaattaaataaaatttattatttacatgacatatgtaa 26201288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 1253836 - 1253943
Alignment:
Q  118 ttggaaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||| |||||||||||| ||  ||| ||||||| |||||||||| |||  |||||||||| |||  ||||||||| ||||||||||||||||||||||    
T  1253836 ttggaatcaaggttttaca-ctcaagagtttacctcaactcgttttacctttgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaatta 1253934  T
Q  218 -ataaaatt 225  Q
     ||||||||    
T  1253935 tataaaatt 1253943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 14731740 - 14731812
Alignment:
Q  154 aactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||||    
T  14731740 aactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 14731812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 21024677 - 21024621
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||    
T  21024677 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 21024621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 21486909 - 21486833
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||| ||||| ||||   || ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  21486909 gagagtttacctcaactcattttctttaagtaaactcgactcgagaactcgtatgagtttagctaaaattaaaatta 21486833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 37915397 - 37915456
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    |||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  37915397 ccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 37915456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 43172877 - 43172822
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgac 180  Q
    |||||||||||| || |||| ||||||| ||||| |||||||||||||||||||||    
T  43172877 caaggttttacaactcgagagtttacctcaactcattttgcctaggtaaactcgac 43172822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 42044237 - 42044191
Alignment:
Q  171 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  42044237 taaattcgactcgagaactcgtatgagtttacctaaaattaaaatta 42044191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 5771500 - 5771541
Alignment:
Q  142 agaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  5771500 agaatttacctcaactcgttttgcctaggtaaacttgactcg 5771541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 5771541 - 5771598
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatta 226  Q
    ||||||||||||||| || |||||| ||||||||||||||| |||||| |||||||||    
T  5771541 gtaaactcgactcgaaaattcgtacgagtttacctaaaattgaaattatataaaatta 5771598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 35314140 - 35314084
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  ||||||||  |||||||||||||||||||||| ||||||||    
T  35314140 gtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaattatataaaatt 35314084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 286
Target Start/End: Complemental strand, 40139879 - 40139848
Alignment:
Q  255 aataaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||||||||||    
T  40139879 aataaggcttaattgcacttttggccccctat 40139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 4639219 - 4639277
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| ||||||||||  ||||||||||||||||||    
T  4639219 caaggttttgcaactcgagagtttacctcaactcgttttaactaggtaaactcgactcg 4639277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 38911083 - 38911041
Alignment:
Q  171 taaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  38911083 taaactcgactcgtaaactcgtacgagtttacctaaaattaaa 38911041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 14742242 - 14742205
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  14742242 tttacctcaactcgttttacctaggtaaactcgactcg 14742205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 6269155 - 6269115
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  6269155 aactcgtacgagtttacctaaaattaaaattatataaaatt 6269115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 46622548 - 46622580
Alignment:
Q  254 taataaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||| |||||||    
T  46622548 taataaggcttaattgcacttttggacccctat 46622580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 47370882 - 47370983
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  47370882 caaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaa 47370981  T
Q  224 tt 225  Q
    ||    
T  47370982 tt 47370983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 51903633 - 51903548
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaa 214  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||    
T  51903633 gttttacatcttgagagtttacctcaactcgttttgcctaggtaagctcgactcgagaactcgtacgagtttacttaaatttaaaa 51903548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 15928359 - 15928279
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  15928359 tttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattagaattatataaaatt 15928279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 49236316 - 49236420
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 220  Q
    ||||||| ||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||    
T  49236316 aaccaagattttacaactcaagagtttacctcaactcgttttgcctaggtaaactcgactcgaaaactcgtacgagtttacataaaattaaaattatata 49236415  T
Q  221 aaatt 225  Q
    |||||    
T  49236416 aaatt 49236420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 27257569 - 27257695
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaa 222  Q
    ||||||||||||| || |||| ||||||| ||||||||||  | | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||    
T  27257569 ccaaggttttacaactcgagagtttacctcaactcgttttatccaagtaaactcgactcgagaactcttacgagtttacctaaaattaaaattaaattaa 27257668  T
Q  223 attagttatttacaagacatatgtaaa 249  Q
    |||  ||||||||| ||||||| ||||    
T  27257669 atttattatttacatgacatatctaaa 27257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 49971019 - 49971128
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaaga 239  Q
    |||| ||||||| || | |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||  ||||||||| ||    
T  49971019 gagagtttacctcaatttgttttgctcaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaagtttattatttacatga 49971118  T
Q  240 catatgtaaa 249  Q
    ||||||||||    
T  49971119 catatgtaaa 49971128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 25254329 - 25254229
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||| | |||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||    
T  25254329 caaggttttacaactcgagagtttacttcaactcgttttacctaggtaaactcgactcgagaacttgtacgagtttacct-aaattaaaattatataaaa 25254231  T
Q  224 tt 225  Q
    ||    
T  25254230 tt 25254229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 48965829 - 48965930
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||||||||||| |||| ||||||||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||| ||||||    
T  48965829 caaggttttgcaactcgagaatttacctcaacttgttttgccttggtaaactcaactcgagaactcctacgagttaacctaaaattaaaattatataaaa 48965928  T
Q  224 tt 225  Q
    ||    
T  48965929 tt 48965930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 2292596 - 2292672
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2292596 gagagtttacctcaactcattttgtctaggtaaactcgactcgggaactcgtacgagtttacctaaaattaaaatta 2292672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 52182792 - 52182683
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaaga 239  Q
    |||| |||| || ||||||||||| | |||||||||||| ||||||||| |||| ||||||  ||||||||||||| |||||||||  ||||||||| ||    
T  52182792 gagagtttatctcaactcgttttgtccaggtaaactcgattcgagaacttgtacgagtttatttaaaattaaaattaaataaaatttattatttacatga 52182693  T
Q  240 catatgtaaa 249  Q
    ||||||||||    
T  52182692 catatgtaaa 52182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 11578454 - 11578545
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||    
T  11578454 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaatt 11578545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 42303728 - 42303808
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||||||  | |||||||||||||||||||| ||||||||    
T  42303728 tttacctcaactcgttttgtttaggtaaattcgactcgagaactcgtatgactttacctaaaattaaaattatataaaatt 42303808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 49452417 - 49452473
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  49452417 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 49452473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 1242637 - 1242728
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||| ||||||||| |||  ||||||||| ||||||||||| |||||||||    
T  1242637 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaactcgaatcgtaaactcgtacgagtttacctaagattaaaatt 1242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 8148110 - 8148019
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    ||||||||| || || |||| ||||||| ||||||||||  |||||||||||||| |||  ||||||||| ||||||||||||||| |||||    
T  8148110 caaggttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgaatcgtaaactcgtacgagtttacctaaaattgaaatt 8148019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 34750991 - 34751092
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| ||||||||||  | | |||||||||| |||  ||||||||| | |||||||||||||||||||| ||||||    
T  34750991 caaggttttacaactcgagagtttacctcaactcgttttagcaatgtaaactcgaatcgtaaactcgtacgaatttacctaaaattaaaattatataaaa 34751090  T
Q  224 tt 225  Q
    ||    
T  34751091 tt 34751092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 3583311 - 3583391
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaatt 210  Q
    ||||||| || |||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||  |||||||    
T  3583311 ttttacaactcgagagtttacctcaactcattttgcttaggtaaactcgactcgagaactcgtaagagtttatataaaatt 3583391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 43855191 - 43855087
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 220  Q
    ||||||| ||||||| || |||| ||||| | |||||||||| |||   ||||||||||||   ||||||||| |||||||||||||||||||||| |||    
T  43855191 aaccaagattttacaactcgagagtttacgtcaactcgttttaccttattaaactcgactcataaactcgtacgagtttacctaaaattaaaattatata 43855092  T
Q  221 aaatt 225  Q
    |||||    
T  43855091 aaatt 43855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 3594038 - 3593980
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    |||||||||||| || |||| ||||||| |||||||||| |||||||||||||||||||    
T  3594038 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 3593980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 34019760 - 34019659
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| ||||  ||||  ||| ||||||| || |||  ||||||||| |||||||||||||||||||||| ||||||    
T  34019760 caaggttttacaactcgagagtttacctcaacttattttagctatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaa 34019661  T
Q  224 tt 225  Q
    ||    
T  34019660 tt 34019659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 5208613 - 5208669
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgact 181  Q
    |||||||||||| || |||| ||||||| |||||||||| |||||||||||||||||    
T  5208613 caaggttttacaactcgagagtttacctcaactcgttttacctaggtaaactcgact 5208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 50038026 - 50038089
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaa 248  Q
    ||||| |||||||||||||||||||||||||| ||||||||  |||| |||| |||||||||||    
T  50038026 aactcttacaagtttacctaaaattaaaattatataaaatttattatatacatgacatatgtaa 50038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 4006128 - 4006070
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  4006128 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 4006070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 9174651 - 9174593
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  9174651 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 9174593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 18246882 - 18246940
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  18246882 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 18246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 41354201 - 41354143
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  41354201 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 41354143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 51107963 - 51107905
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  51107963 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 51107905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 26758373 - 26758317
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcg 178  Q
    |||||||||||| || || |||| ||||||| |||||||||| ||||||||||||||    
T  26758373 aaccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcg 26758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 19863623 - 19863577
Alignment:
Q  181 tcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatta 226  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||    
T  19863623 tcgagaactcgtacgagtttaactaaaattaaaattatataaaatta 19863577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 32759440 - 32759486
Alignment:
Q  174 actcgactcgagaactcgtacaagtttacctaaaattaaaattaata 220  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||    
T  32759440 actcgactcgagaattcgtacgaatttacctaaaataaaaattaata 32759486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 35193822 - 35193745
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttac 202  Q
    |||| ||||||| || |||| ||||| | || ||||||||  ||| |||| ||||||||||||||||||| |||||||    
T  35193822 caagattttacaactcgagagtttacttcaattcgttttgtttagataaattcgactcgagaactcgtacgagtttac 35193745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 15911670 - 15911698
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  15911670 aaggcttaattgcacttttggccccctat 15911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 28403322 - 28403362
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  28403322 aactcgtacgagtttacctaaaattaaaattatataaaatt 28403362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 33886366 - 33886406
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  33886366 aactcgtacgagtttacctaaaattaaaattatataaaatt 33886406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 33957886 - 33957846
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  33957886 aactcgtacgagtttacctaaaattaaaattatataaaatt 33957846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 35580736 - 35580764
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  35580736 aaggcttaattgcacttttggccccctat 35580764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 42637479 - 42637567
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||| ||  ||| |||| || |||||||| | |||| |||||||||| | |  ||||||||  ||||||||||||||||||||||    
T  42637479 gttttacaactcaagagtttatctcaactcgttatacctatgtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaatta 42637567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 46895859 - 46895827
Alignment:
Q  255 aataaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||| |||||||||||||||    
T  46895859 aataaggcttaattgcagttttggccccctatg 46895827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 42423994 - 42423902
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||||| || ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42423994 caaggttttgcaacttgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaatta 42423902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 8029166 - 8029267
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8029166 caaggttttgcaactcgagagtttacctcaactcgtttcgcctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaa 8029265  T
Q  224 tt 225  Q
    ||    
T  8029266 tt 8029267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 18985121 - 18984999
Alignment:
Q  123 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 221  Q
    ||||||||||| || || |||| ||||||| |||| |||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||    
T  18985121 accaaggttttgcaactcgagagtttacctcaacttgttttgtctaggtaaacttgactcgagaactcgcacgagtttacctaaaattaaaattatataa 18985022  T
Q  222 aattagttatttacaagacatat 244  Q
    ||||  |||| | ||||||||||    
T  18985021 aatttattatgtgcaagacatat 18984999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 35880152 - 35880022
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaa 223  Q
    |||||||||||   | |||| |||| || |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  35880152 caaggttttacgattagagagtttagctcaactcgttttgcttagttaaactcgacttgagaactcgtacgagtttatctaaaattaaaattaaataaaa 35880053  T
Q  224 ttagttatttacaagacatatgtaaattact 254  Q
    ||  ||||||||| |||||||||||| ||||    
T  35880052 tttattatttacatgacatatgtaaactact 35880022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 24082960 - 24082875
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||    
T  24082960 gagagtttacctcaactcgttttgcctaggtaaactcgactagagaactcgtacgagtttacctaaaattaatattatataaaatt 24082875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 41394652 - 41394551
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||  |||||| |||||| ||||||    
T  41394652 caaggttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaactcgtacgagtttacaaaaaatttaaattatataaaa 41394553  T
Q  224 tt 225  Q
    ||    
T  41394552 tt 41394551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 3007131 - 3007226
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaata 220  Q
    |||||||||||| || |||| ||||||| ||||||||||||||||  |||||||| ||||||| |||||| |||||||||||||||||||| ||||    
T  3007131 caaggttttacaactcgagagtttacctcaactcgttttgcctagcaaaactcgattcgagaattcgtacgagtttacctaaaattaaaatcaata 3007226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 12737396 - 12737487
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||  | |||| ||||||| |||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  12737396 aaggttttacaattcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagaagtcgtacgagttaacctaaaatgaaaatta 12737487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 12521735 - 12521811
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||| ||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  12521735 gagagtttacctcaactcattttgccaaggtaaactcgattcgagaactcgtgcgagtttacctaaaattaaaatta 12521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 26619984 - 26620040
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  26619984 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 26620040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 27974323 - 27974370
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  27974323 gtaaactcgactcgagaactcgtataagtttacctaaaattaaaatta 27974370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 28031592 - 28031639
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28031592 gtaaactcgactcgagaactcgtataagtttacctaaaattaaaatta 28031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 44977529 - 44977438
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||| || || |||| ||||| | |||||||||||| |||||||| ||||||||||||||  ||  ||||||| ||||||||||||||    
T  44977529 aaggttttgcaactcgagagtttacttcaactcgttttgcttaggtaaattcgactcgagaacttctaagagtttacgtaaaattaaaatta 44977438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 24067566 - 24067476
Alignment:
Q  147 ttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttaca 236  Q
    ||||||||||| ||||||   ||||||||| || |||||||||| || ||||||| |||||||||||||| |||||||||  |||||||||    
T  24067566 ttaccttaactagttttgttcaggtaaacttgattcgagaactcatataagtttatctaaaattaaaattaaataaaatttattatttaca 24067476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 7761256 - 7761208
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 218  Q
    |||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  7761256 gtaaactcaactcgagaactcgtacgagtttatctaaaattaaaattaa 7761208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 33177262 - 33177326
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaaa 249  Q
    ||||||||| |||||||||||||||||||||| ||||||||  |||| |||| ||||||||||||    
T  33177262 aactcgtaccagtttacctaaaattaaaattatataaaatttattatatacatgacatatgtaaa 33177326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 6387259 - 6387314
Alignment:
Q  171 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||    
T  6387259 taaactcgattcgagaattcgtacgagtttacctaaaattaaaattatataaaatt 6387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 19484973 - 19484915
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  19484973 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 19484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 27869131 - 27869187
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||| |||||||||||||||| || ||||||||||||| |||||||| ||||||||    
T  27869131 gtaaattcgactcgagaactcgaacgagtttacctaaaaataaaattatataaaatt 27869187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 6387200 - 6387257
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactc 182  Q
    |||||||||||| ||  ||| ||||||| |||||||||||| ||||||||||| ||||    
T  6387200 caaggttttacaactcaagagtttacctcaactcgttttgcttaggtaaactccactc 6387257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 248
Target Start/End: Original strand, 4870502 - 4870602
Alignment:
Q  149 accttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgta 247  Q
    |||| ||||| |||| | || ||||||| || |||  ||||||||| ||||||||||||||||| |||| ||||||||  |||| |||  ||||||||||    
T  4870502 acctcaactcattttacttatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaatattatataaaatttattatatacgtgacatatgta 4870601  T
Q  248 a 248  Q
    |    
T  4870602 a 4870602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 35795650 - 35795618
Alignment:
Q  255 aataaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||| |||||||||||||||    
T  35795650 aataaggcttaattgcagttttggccccctatg 35795618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 45308449 - 45308481
Alignment:
Q  255 aataaggcttaattgcacttttggccccctatg 287  Q
    |||| ||||||||||||||||||||||||||||    
T  45308449 aatatggcttaattgcacttttggccccctatg 45308481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 25050352 - 25050228
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 224  Q
    ||||||||||| || |||| ||||||| ||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||    
T  25050352 aaggttttacaactcgagagtttacctcaactcgttttgcccaagtaaactcgactcgagaactcggacgagtttacctaaaattaatattaaataaaat 25050253  T
Q  225 tagttatttacaagacatatgtaaa 249  Q
    |  ||||||||| ||||||||||||    
T  25050252 ttattatttacatgacatatgtaaa 25050228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 7667520 - 7667403
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 224  Q
    ||||||||||| ||||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  7667520 aaggttttacaacttgagagtttacctcaactcgttttgcttaagtaaactcgactcgagaactagtacaagtttacctaaaattaaagttaaataaaat 7667421  T
Q  225 tagttatttacaagacat 242  Q
    |   |||||||| |||||    
T  7667420 ttagtatttacatgacat 7667403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 24064083 - 24063984
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaat 224  Q
    ||||||| ||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||    
T  24064083 aaggtttaacaacttaagagtttacctcaactcgttttgcctaggtaaactcgactcgagaactcgtatgagtttacct-aaattaaaattatataaaat 24063985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 53836704 - 53836614
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||| || ||||||| |||||||  |||||||||  |||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  53836704 aaggttttgcaacttgagagtttacctcgactcgttttatctagataaactcgactcgaaaactcgtacgagtttacctaaaattaaaatt 53836614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 43173682 - 43173581
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||| ||||||| ||||||||||   |||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  43173682 caaggttttgcaactcgagagtttacctcaactcgttttatttaggtaaactcgactcgagaactcgtatgagtttacataaaattaaaattacataaaa 43173583  T
Q  224 tt 225  Q
    ||    
T  43173582 tt 43173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 21718099 - 21718201
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaattagttatttacaagacatatg 245  Q
    ||||||||| ||||||||| | | ||||||||  ||||||||||||||| |||||||||||||||||||||||  || ||  ||||||||  ||||||||    
T  21718099 tttaccttagctcgttttgtccacgtaaactcagctcgagaactcgtacgagtttacctaaaattaaaattaaataatttttttatttacttgacatatg 21718198  T
Q  246 taa 248  Q
    |||    
T  21718199 taa 21718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 4962021 - 4962123
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ata 220  Q
    |||||||||||| || ||  ||| ||||||| |||| |||| |||||||||||||||||||||||||| | || |||||||||||||||||||||| |||    
T  4962021 aaccaaggttttgcaactctagagtttacctcaacttgttt-gcctaggtaaactcgactcgagaacttg-acgagtttacctaaaattaaaattatata 4962118  T
Q  221 aaatt 225  Q
    |||||    
T  4962119 aaatt 4962123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 7436915 - 7436971
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  7436915 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 7436971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 27163135 - 27163017
Alignment:
Q  127 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||||| ||||||| ||| ||| |||| ||| |   || ||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  27163135 aggttttacaacttgagagtttgcctcaacttgttatatttatgtaaattcgactcgtaaactcgtacaagtttacctaaaattaaaattatataaaatt 27163036  T
Q  226 agttatttacaagacatat 244  Q
      |||| |||| |||||||    
T  27163035 tattatatacatgacatat 27163017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 32766661 - 32766605
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  32766661 gtaaactcgacttgagaactcgtacgagtttacctaaaattaaaattatataaaatt 32766605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 53644751 - 53644839
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||| |||| |||  ||||||||| ||||||||||||||||||    
T  53644751 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaattcgaatcgtaaactcgtacgagtttacctaaaattaaa 53644839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 8599718 - 8599658
Alignment:
Q  123 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  8599718 accaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 8599658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 22488419 - 22488511
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcga-----gaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||| || |||| ||||||| |||||||||| ||||| ||||||||||||||      ||||||||| ||||||||||||||| |||||    
T  22488419 gttttacaactcgagagtttacctcaactcgttttacctagttaaactcgactcgaattgtaaactcgtacgagtttacctaaaattgaaatt 22488511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 27988265 - 27988341
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||| ||||||| |||| ||||||  ||| ||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  27988265 gagagtttacctcaacttgttttgtttagataaactcgatttgagaattcgtacgagtttacctaaaattaaaatta 27988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 33694012 - 33693956
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  33694012 gtaaactcaactcgagaactcgtacgagtttaccaaaaattaaaattatataaaatt 33693956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 49459111 - 49459055
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  49459111 gtaaacttgactcgagaattcgtacgagtttacctaaaattaaaattatataaaatt 49459055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 37833475 - 37833388
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||||| | || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||||| || |||||||||||||    
T  37833475 aaggttttatagctcgagagtttacctcaactcgttttaactatgtaaactcgaatcgtaaactcgtacaaattaacctaaaattaaa 37833388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 45731406 - 45731315
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||||| | || |||| ||||||| ||||||||||  ||| |||||||||| | |  ||||||||  ||||||||||||||||||||||    
T  45731406 aaggttttataactcgagagtttacctcaactcgttttagctatgtaaactcgaattgtaaactcgtatgagtttacctaaaattaaaatta 45731315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 47466876 - 47466931
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaatt 225  Q
    |||||||||||| |  ||||||||| |||||||||||||||||||||| |||||||    
T  47466876 gtaaactcgacttgtaaactcgtacgagtttacctaaaattaaaattattaaaatt 47466931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 49296874 - 49296816
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  49296874 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 49296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 21385823 - 21385876
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtac 194  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||||||||| ||||    
T  21385823 gagagtttacctcaactcgttttgcttagataaactcgactcgagaacttgtac 21385876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 7436859 - 7436915
Alignment:
Q  127 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||| || || |||| ||||||| |||||||||||| |||||||||||||||||    
T  7436859 aggttttgcaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcg 7436915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 25932206 - 25932150
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgact 181  Q
    |||||||||||| ||||||| ||||| | ||||||||||| || |||||||||||||    
T  25932206 caaggttttacaacttgagagtttacttcaactcgttttgtctgggtaaactcgact 25932150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 33694070 - 33694012
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||||||||||||||||  | ||||||||||||||    
T  33694070 caaggttttgcaactcgagagtttaccttaactcgttttgctaatgtaaactcgactcg 33694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 287
Target Start/End: Complemental strand, 40989715 - 40989685
Alignment:
Q  257 taaggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||||    
T  40989715 taaggcttaattgcacttttggccccctatg 40989685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 49296816 - 49296770
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||| |||  ||||||||| |||||||||||||||||||||    
T  49296816 gtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaatt 49296770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 9818050 - 9818105
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||||||| ||||||||    
T  9818050 gtaaactcgactcgtaaactcgtacgagtt-acctaaaattaaaattatataaaatt 9818105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 17258245 - 17258217
Alignment:
Q  259 aggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||    
T  17258245 aggcttaattgcacttttggccccctatg 17258217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 30237957 - 30238033
Alignment:
Q  171 taaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgt 246  Q
    ||||||||||| |  || | |||| ||||||||||||||||||| || ||||||||  |||| ||||||||||||||    
T  30237957 taaactcgacttgtaaatttgtacgagtttacctaaaattaaaagtatataaaatttattatatacaagacatatgt 30238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 40988593 - 40988625
Alignment:
Q  255 aataaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||||||||||| |||||||    
T  40988593 aataaggcttaattgcacttttggctccctatg 40988625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 43001940 - 43001912
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  43001940 aaggcttaattgcacttttggccccctat 43001912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 53764573 - 53764601
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  53764573 aaggcttaattgcacttttggccccctat 53764601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 16439482 - 16439379
Alignment:
Q  123 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 221  Q
    ||||||||||| || || |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  16439482 accaaggtttttcaactcgagagtttacctcaactcgttttgtctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataa 16439383  T
Q  222 aatt 225  Q
    ||||    
T  16439382 aatt 16439379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 31534419 - 31534520
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || ||||||| ||||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  31534419 caaggttttgcaacttgagagtttacctcaaatcgttttgtctgggtaaactcgactcaagaactcgtacgagtttacctaaaattaaaattatataaaa 31534518  T
Q  224 tt 225  Q
    ||    
T  31534519 tt 31534520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 31975066 - 31975186
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || |||| ||||||| ||||||||| || ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  31975066 caaggttttgcaactcgagagtttacctcaactcgtttcgcatagataaactcgactcgagaactcgtacgattttacctaaaattaaaattatataaaa 31975165  T
Q  224 ttagttatttacaagacatat 244  Q
    ||  |||| | ||||||||||    
T  31975166 tttattatatgcaagacatat 31975186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 24202893 - 24202799
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaa 218  Q
    ||||||||||| |  | |||| |||| ||||||||||||| ||||||||||||||||| | ||| |||||| |||||||||||||||||||||||    
T  24202893 ccaaggttttataattcgagactttatcttaactcgttttacctaggtaaactcgacttgtgaattcgtacgagtttacctaaaattaaaattaa 24202799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 28042151 - 28042050
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaattagttatttacaagacatatg 245  Q
    ||||||| |||| |||||   ||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||  ||||||||| | ||||||    
T  28042151 tttacctcaacttgttttatttaggtaaactcgactcgagaacttgtacgagtttacctaaaattaaaat--ataaaatttattatttacatgtcatatg 28042054  T
Q  246 taaa 249  Q
    ||||    
T  28042053 taaa 28042050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 32567630 - 32567721
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactc-----gagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttat 231  Q
    ||||||||||||| |||||| ||||||||||||||||     |||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  32567630 tttaccttaactcattttgcttaggtaaactcgactcaactcgagaactcgtacgagtttacctaaaattaaaattatataaaatttgttat 32567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 2607703 - 2607630
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaa 214  Q
    |||||||||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||||||||||    
T  2607703 gagaatttacttcaactcgtttcgcctaggtaaaattaactcgagaactcgtacgagtttacctaaaattaaaa 2607630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 31995709 - 31995765
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||    
T  31995709 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 31995765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 1462728 - 1462786
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  1462728 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 1462786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 6789141 - 6789083
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  6789141 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 6789083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 10110658 - 10110716
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  10110658 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 10110716  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Complemental strand, 2173935 - 2173906
Alignment:
Q  258 aaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||||||||||||||||    
T  2173935 aaggcttaattgcacttttggccccctatg 2173906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 4037035 - 4037064
Alignment:
Q  257 taaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||||||||    
T  4037035 taaggcttaattgcacttttggccccctat 4037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 11745992 - 11746024
Alignment:
Q  254 taataaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||| |||||||    
T  11745992 taataaggcttaattgcacttttggacccctat 11746024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 14169033 - 14169005
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  14169033 aaggcttaattgcacttttggccccctat 14169005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 33274230 - 33274258
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  33274230 aaggcttaattgcacttttggccccctat 33274258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 17503227 - 17503336
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaat 224  Q
    ||||||||||| ||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  17503227 aaggttttacaacttgagagtttacctcaactcattttgcttaggtaaactcgactcgagaactcgtatgagtttacctaaaattaaaattaaataaaat 17503326  T
Q  225 tagttattta 234  Q
    |  |||||||    
T  17503327 ttattattta 17503336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 12755093 - 12754996
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||| || |||| ||||||| |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||    
T  12755093 gttttacaactcgagagtttacctcaactcgttttgcttaggtaaactcgactcgagacctcgtacgagtttacctaaaattaaaattatataaaatt 12754996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 29509373 - 29509498
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaa 222  Q
    |||||||||| || || |||| ||||||| ||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  29509373 ccaaggttttgcaactcgagagtttacctcaactaattttgtctaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatattaa 29509472  T
Q  223 attagttatttacaagacatatgtaa 248  Q
    |||  |||| | ||||||||||||||    
T  29509473 atttattatatgcaagacatatgtaa 29509498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 24454353 - 24454223
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaa 223  Q
    |||||||||||   | |||| |||| || |||||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  24454353 caaggttttacgattagagagtttagctcaactcgttttgcttagttaaactcgacttgagaactcgtacgagtttatctaaaattaaaattaaataaaa 24454254  T
Q  224 ttagttatttacaagacatatgtaaattact 254  Q
    ||  ||||||||| |||||||||||| ||||    
T  24454253 tttattatttacatgacatatgtaaactact 24454223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 24965804 - 24965894
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaat 215  Q
    ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  24965804 caaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcgagaactcatacgagtttatctaaaattaaaat 24965894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 33141096 - 33141011
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||| ||||||| || ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  33141096 gagagtttacctcaattcgttttgtttaggtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattatataaaatt 33141011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 32890665 - 32890573
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||||| || || |||| ||||||| |||||||||||  ||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  32890665 caaggttttgcaactcgagagtttacctcaactcgttttgtttaggtaaactcgacttgataactcgtacgagtttacctaaaattaaaatta 32890573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 46862254 - 46862349
Alignment:
Q  122 aaccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||| || || |||| ||||||| ||||||||||| ||||||||| |||| ||||||||||  || ||||||||||||||||||||||    
T  46862254 aaccaaggttttgcaactcgagagtttacctcaactcgttttgtctaggtaaattcgattcgagaactctgacgagtttacctaaaattaaaatta 46862349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 50517882 - 50517781
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    ||||||||| || || || | ||||||| ||||| ||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||| ||||||    
T  50517882 caaggttttgcaactcgaaagtttacctcaactcattttgcctaggtaaactcgactcgagaactcatatgagtttatctaaaattaaaattatataaaa 50517783  T
Q  224 tt 225  Q
    ||    
T  50517782 tt 50517781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 872236 - 872156
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaa-ttagttatttacaagacatatgtaaa 249  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  ||||||||| || |||||||||    
T  872236 gtaaactcgactcgagaactcgtacgagtttacctaaaattaaaattaaaaaaattttattatttacatgagatatgtaaa 872156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 41469634 - 41469737
Alignment:
Q  123 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataa 221  Q
    ||||| |||||||| || |||| ||||||| ||||||||||  ||| ||||||||||||||  ||||||||  |||||||||||||||||||||| ||||    
T  41469634 accaaagttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgactcgtaaactcgtatgagtttacctaaaattaaaattatataa 41469733  T
Q  222 aatt 225  Q
    ||||    
T  41469734 aatt 41469737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 55166141 - 55166015
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaa 222  Q
    |||||||||||||  || ||| |||| || ||||| ||||| ||||||||||| || | |||||||||||  ||||||| ||||||||||||| ||||||    
T  55166141 ccaaggttttacaattttagagtttatctcaactcattttgtctaggtaaactagatttgagaactcgtatgagtttacttaaaattaaaattaaataaa 55166042  T
Q  223 attagttatttacaagacatatgtaaa 249  Q
    |||  ||||||||| ||||||| ||||    
T  55166041 atttattatttacatgacatatataaa 55166015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 23170114 - 23170216
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaa 222  Q
    |||| |||||||| ||  ||| |||| || |||||||||| | || |||||||||| |||  |||||||||||||||||||||||||||||||| |||||    
T  23170114 ccaaagttttacaactcaagagtttatctcaactcgttttacataagtaaactcgaatcggaaactcgtacaagtttacctaaaattaaaattatataaa 23170213  T
Q  223 att 225  Q
    |||    
T  23170214 att 23170216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 56423416 - 56423502
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaatta 211  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| ||||||||||||||||    
T  56423416 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaatta 56423502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 8562520 - 8562605
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||||    
T  8562520 gagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaatt 8562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 25014120 - 25014019
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||||| || | |  ||||||||| |||||||||||||||||||||| ||||||    
T  25014120 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaacttgaattgtaaactcgtacgagtttacctaaaattaaaattatataaaa 25014021  T
Q  224 tt 225  Q
    ||    
T  25014020 tt 25014019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 26973106 - 26973009
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||||| || |||| ||| ||| |||| ||||||| || ||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  26973106 gttttacaactcgagagtttgcctcaacttgttttgcttaagtaaatttgactcgagaactcgtacgagtttaccttaaattaaaattatataaaatt 26973009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 40163405 - 40163317
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||  ||||||||||||||||||    
T  40163405 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtaggagtttacctaaaattaaa 40163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 26490618 - 26490681
Alignment:
Q  154 aactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||||||   ||||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  26490618 aactcgttttatttaggtaaactcgattcgagaactcatacgagtttacctaaaattaaaatta 26490681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 40487063 - 40487154
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||| ||| ||||||||||    
T  40487063 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttatctataattaaaatt 40487154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 6486757 - 6486841
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaat 209  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| ||   ||||||||| ||||||||||||||    
T  6486757 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcataaactcgtacgagtttacctaaaat 6486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 26449287 - 26449199
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||||||| || || | ||||||| ||||||||||  ||| ||||||| || |||  ||||||||| ||||||||||||||||||    
T  26449287 caaggttttacaactcgatagtttacctcaactcgttttagctatgtaaacttgaatcgtaaactcgtacgagtttacctaaaattaaa 26449199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 23670917 - 23671008
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||| || |||| ||||||| ||||| |||| ||||  |||||||||||||  ||||| ||| |||||||||| |||| |||||    
T  23670917 caaggttttacaactcgagagtttacctcaactcattttacctatataaactcgactcgtaaactcatacgagtttacctagaattgaaatt 23671008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 29469868 - 29469819
Alignment:
Q  167 taggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||||||||  ||||||||| ||||||||||||||| |||||    
T  29469868 taggtaaactcgactcgtaaactcgtacgagtttacctaaaattgaaatt 29469819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 4511416 - 4511472
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||| || ||||| |||||| |||||||||||||||||||||| ||||||||    
T  4511416 gtaaactcgtcttgagaaatcgtacgagtttacctaaaattaaaattatataaaatt 4511472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 9973507 - 9973423
Alignment:
Q  129 gttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    |||||||| ||  ||| ||||||| ||||| ||||  ||| |||||||||||||   ||||||||| ||||||||||||||||||    
T  9973507 gttttacaactcaagattttacctcaactcattttagctatgtaaactcgactcataaactcgtacgagtttacctaaaattaaa 9973423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 54561843 - 54561800
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||    
T  54561843 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaa 54561800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 872273 - 872236
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  872273 tttacctcaactcgttttgtctaggtaaactcgactcg 872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 22480417 - 22480324
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    ||||||||||||| || |||| ||||| | |||||   || |||| ||||| ||||||||  ||||||||  |||||| |||||||||||||||    
T  22480417 ccaaggttttacaactcgagagtttacttcaactctaattacctaagtaaattcgactcgtaaactcgtatcagtttatctaaaattaaaatta 22480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 26858341 - 26858370
Alignment:
Q  257 taaggcttaattgcacttttggccccctat 286  Q
    ||||||||||||||||||||||||||||||    
T  26858341 taaggcttaattgcacttttggccccctat 26858370  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 2016253 - 2016281
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  2016253 aaggcttaattgcacttttggccccctat 2016281  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 29965893 - 29965949
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||| |||||||||  |||| |||| |||||||||||||||||||||| ||||||||    
T  29965893 gtaatctcgactcgtaaactagtacgagtttacctaaaattaaaattatataaaatt 29965949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 53573698 - 53573778
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaaa 249  Q
    ||||||||||||  ||||||||||| |||||||||| || |||||||| ||| ||||  |||| | || ||||||||||||    
T  53573698 gtaaactcgacttaagaactcgtacgagtttacctagaaataaaattatatacaatttattatatgcatgacatatgtaaa 53573778  T

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Target: scaffold0116 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 4922 - 5023
Alignment:
Q  146 tttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatat 244  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||  ||||||| | |||||||    
T  4922 tttacctcaactcgttttgcctaagtaaattcgactcgagaactcgtacgagtttacctaaaattaaaattaaataaaatttattatttatatgacatat 5021  T
Q  245 gt 246  Q
    ||    
T  5022 gt 5023  T

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Target: scaffold0024 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 136295 - 136191
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaaga 239  Q
    |||||||||||| ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||  |||| |||| ||    
T  136295 gagaatttacctcaactcattttgcctagataaactcgactcgagaactcgcacgagtttacctaaaattaaaattatataaaatttattatatacatga 136196  T
Q  240 catat 244  Q
    |||||    
T  136195 catat 136191  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 21490369 - 21490250
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagt 228  Q
    ||||||| || ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||||  |    
T  21490369 ttttacaactcgagaatttaccttaactcgctttgcttaggtaaactcgattcgagaactcgtac-agtttatctaaaattaaaattaaataaaatttat 21490271  T
Q  229 tatttacaagacatatgtaaa 249  Q
    |||||| | ||||||| ||||    
T  21490270 tatttatatgacatatataaa 21490250  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 29759401 - 29759277
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaattaataaaat 224  Q
    |||||||||||| || || | ||||||| ||||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||||||||||||  ||||    
T  29759401 caaggttttacaactcgatagtttacctcaactcattttgcttaggtaaactcgactcgagaaatcgtacgagtttatctaaaattaaaattaaataaat 29759302  T
Q  225 tagttatttacaagacatatgtaaa 249  Q
    |  ||||||| | ||||||||||||    
T  29759301 ttattatttaaatgacatatgtaaa 29759277  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 29716216 - 29716306
Alignment:
Q  126 aaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||| || || |||| ||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  29716216 aaggttttgcaactcgagagtttacctcaactcgttttgcctaggtaaactcgactcgagatcccgtacgagtttacctaaaattaaaatt 29716306  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 16548559 - 16548652
Alignment:
Q  157 tcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt-aataaaattagttatttacaagacatatgtaaa 249  Q
    |||||||||| ||||||||| || |||||||||||||| | ||||||||||||||||||| |||||||||  ||||||||| | ||||||||||    
T  16548559 tcgttttgcccaggtaaacttgagtcgagaactcgtacgaatttacctaaaattaaaattaaataaaatttattatttacatggcatatgtaaa 16548652  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 33892262 - 33892363
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaa 223  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||||||||||||||||||| ||||||    
T  33892262 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttacctaaaattaaaattatataaaa 33892361  T
Q  224 tt 225  Q
    ||    
T  33892362 tt 33892363  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 35702012 - 35701920
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta 217  Q
    |||||||||||| || |||| ||||||| |||||||||| | ||||||||||| |||||  |||| |||| ||||||||||||||||||||||    
T  35702012 caaggttttacaactcgagagtttacctcaactcgttttacttaggtaaactcaactcgtaaacttgtacgagtttacctaaaattaaaatta 35701920  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 5650128 - 5650220
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    ||||||||||||  ||  ||| ||||||| |||||||||| ||||||||||||||||||   ||||||||| ||||||||||||||| |||||    
T  5650128 ccaaggttttactactcaagagtttacctcaactcgttttacctaggtaaactcgactcataaactcgtacgagtttacctaaaattgaaatt 5650220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 31914152 - 31914033
Alignment:
Q  130 ttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaattagt 228  Q
    ||||||| || |||| ||||||| |||||||||| |||| |||||||||| ||   ||||||||| ||| |||||||||||||||||| ||||||||  |    
T  31914152 ttttacaactcgagagtttacctcaactcgttttacctatgtaaactcgaatcataaactcgtacgagtatacctaaaattaaaattatataaaatttat 31914053  T
Q  229 tatttacaagacatatgtaa 248  Q
    ||| |||| || ||||||||    
T  31914052 tatatacatgatatatgtaa 31914033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 7124228 - 7124319
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    ||||||||| || || || | ||||||| |||||||||| ||||||||||||||| |||  |||||| || ||||||||||||||| |||||    
T  7124228 caaggttttgcaactcgaaagtttacctcaactcgttttacctaggtaaactcgaatcgtaaactcgcacgagtttacctaaaattgaaatt 7124319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 21238203 - 21238294
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| ||||||| || |||  || |||||| |||||||||||||||||||||    
T  21238203 caaggttttacaactcgagagtttacctcaactcgttttaactatgtaaacttgaatcgtaaaatcgtacgagtttacctaaaattaaaatt 21238294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 34910267 - 34910168
Alignment:
Q  127 aggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||  | |||| ||||||| ||||||||||   || |||||||||| |||  ||||||||| |||||| ||||||||||||||| ||||||||    
T  34910267 aggttttacaattcgagagtttacctcaactcgttttagttatgtaaactcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatt 34910168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 25869400 - 25869344
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    ||||||||||||||  || |||||| |||||||||||||||||||||| ||||||||    
T  25869400 gtaaactcgactcgtaaattcgtacgagtttacctaaaattaaaattatataaaatt 25869344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 3032831 - 3032768
Alignment:
Q  186 aactcgtacaagtttacctaaaattaaaatta-ataaaattagttatttacaagacatatgtaa 248  Q
    ||||||||| |||||||||||||| ||||||| ||||||||  |||| |||| |||||||||||    
T  3032831 aactcgtacgagtttacctaaaatcaaaattatataaaatttattatatacatgacatatgtaa 3032768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 32236946 - 32236989
Alignment:
Q  170 gtaaactcgactcgagaactcgtacaagtttacctaaaattaaa 213  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||    
T  32236946 gtaaactcgactcgtaaactcgtacgagtttacctaaaattaaa 32236989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 40768210 - 40768175
Alignment:
Q  251 tactaataaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||| |||||||    
T  40768210 tactaataaggcttaattgcacttttggacccctat 40768175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 37797459 - 37797517
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||||||| || || |||| ||||||| |||||||||| ||||| |||||||||||||    
T  37797459 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaactcgactcg 37797517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 2674525 - 2674610
Alignment:
Q  141 gagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||| ||||||| ||||||||||  |||  |||| |||| |||  ||||||||| |||||| ||||||||||||||| ||||||||    
T  2674525 gagagtttacctcaactcgttttagctatataaattcgaatcgtaaactcgtacgagtttatctaaaattaaaattatataaaatt 2674610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 38973326 - 38973355
Alignment:
Q  258 aaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||||||||||||||||    
T  38973326 aaggcttaattgcacttttggccccctatg 38973355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 12610242 - 12610270
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  12610242 aaggcttaattgcacttttggccccctat 12610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 16801314 - 16801262
Alignment:
Q  174 actcgactcgagaactcgtacaagtttacctaaaattaaaatta-ataaaatt 225  Q
    |||||| ||| |||||||||||||| || ||||||||||||||| ||||||||    
T  16801314 actcgaatcgtgaactcgtacaagtgtatctaaaattaaaattatataaaatt 16801262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 28622506 - 28622566
Alignment:
Q  123 accaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    ||||| ||||| || || |||| ||||||| ||||||||||  ||||||||||||||||||    
T  28622506 accaaagttttgcaactcgagagtttacctcaactcgttttagctaggtaaactcgactcg 28622566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 38162592 - 38162620
Alignment:
Q  259 aggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||    
T  38162592 aggcttaattgcacttttggccccctatg 38162620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 25002 - 25093
Alignment:
Q  125 caaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcgagaactcgtacaagtttacctaaaattaaaatt 216  Q
    |||||||||||| || |||| ||||||| ||||||||||  ||| |||||||||| |||  ||||||||| |||||| ||| ||||||||||    
T  25002 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaactcgaatcgtaaactcgtacgagtttatctataattaaaatt 25093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 16136 - 16195
Alignment:
Q  124 ccaaggttttacatcttgagaatttaccttaactcgttttgcctaggtaaactcgactcg 183  Q
    |||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||||    
T  16136 ccaaggttttgcaactcgagagtttacctcaactcgttttacctaggtaaactcgactcg 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 20106 - 20135
Alignment:
Q  258 aaggcttaattgcacttttggccccctatg 287  Q
    ||||||||||||||||||||||||||||||    
T  20106 aaggcttaattgcacttttggccccctatg 20135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 122645 - 122617
Alignment:
Q  258 aaggcttaattgcacttttggccccctat 286  Q
    |||||||||||||||||||||||||||||    
T  122645 aaggcttaattgcacttttggccccctat 122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 199665 - 199693
Alignment:
Q  259 aggcttaattgcacttttggccccctatg 287  Q
    |||||||||||||||||||||||||||||    
T  199665 aggcttaattgcacttttggccccctatg 199693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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