View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11538_low_90 (Length: 288)

Name: NF11538_low_90
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11538_low_90
NF11538_low_90
[»] chr3 (50 HSPs)
chr3 (12-273)||(28510623-28510884)
chr3 (12-273)||(28002220-28002481)
chr3 (61-273)||(28132041-28132253)
chr3 (60-273)||(28183857-28184070)
chr3 (60-273)||(27975442-27975655)
chr3 (61-273)||(28147825-28148037)
chr3 (12-273)||(28053517-28053778)
chr3 (12-273)||(28063942-28064203)
chr3 (64-273)||(28081837-28082046)
chr3 (99-273)||(28159332-28159506)
chr3 (60-273)||(28481451-28481664)
chr3 (12-165)||(28147584-28147737)
chr3 (64-251)||(27918466-27918653)
chr3 (12-175)||(28481909-28482072)
chr3 (64-273)||(11418825-11419034)
chr3 (12-165)||(28481751-28481904)
chr3 (60-227)||(17746167-17746334)
chr3 (60-227)||(19047487-19047654)
chr3 (64-273)||(27460997-27461203)
chr3 (19-227)||(27392230-27392438)
chr3 (64-273)||(28035522-28035731)
chr3 (72-220)||(12146126-12146274)
chr3 (72-225)||(18026466-18026619)
chr3 (107-227)||(27347551-27347671)
chr3 (113-209)||(26114998-26115094)
chr3 (113-209)||(26210106-26210202)
chr3 (113-209)||(26142310-26142406)
chr3 (72-220)||(27376309-27376457)
chr3 (113-209)||(26180615-26180711)
chr3 (113-209)||(26237350-26237446)
chr3 (12-61)||(28147752-28147801)
chr3 (113-209)||(26131578-26131674)
chr3 (12-61)||(28183785-28183834)
chr3 (12-61)||(28481687-28481736)
chr3 (65-167)||(27457030-27457132)
chr3 (12-61)||(18026654-18026703)
chr3 (12-61)||(27918393-27918442)
chr3 (12-61)||(27975370-27975419)
chr3 (12-61)||(28081764-28081813)
chr3 (104-251)||(26627626-26627776)
chr3 (19-58)||(12146049-12146088)
chr3 (19-61)||(27376232-27376274)
chr3 (12-61)||(11418752-11418801)
chr3 (12-61)||(17746357-17746406)
chr3 (12-61)||(19047677-19047726)
chr3 (19-60)||(27347472-27347513)
chr3 (12-61)||(28131968-28132017)
chr3 (13-61)||(26180775-26180823)
chr3 (13-61)||(26210266-26210314)
chr3 (13-61)||(26237510-26237558)
[»] scaffold0257 (1 HSPs)
scaffold0257 (12-273)||(17371-17632)
[»] chr2 (3 HSPs)
chr2 (99-273)||(8019890-8020064)
chr2 (105-261)||(22391264-22391420)
chr2 (12-61)||(22391147-22391196)
[»] chr7 (2 HSPs)
chr7 (60-273)||(8693284-8693497)
chr7 (12-61)||(8693523-8693572)
[»] scaffold0043 (2 HSPs)
scaffold0043 (108-261)||(54687-54840)
scaffold0043 (12-61)||(54911-54960)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 28510884 - 28510623
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  | ||| |||| ||||||||    
T  28510884 tgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaaactaagaatacttgttgtagtaaagtgc 28510785  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttg 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||| |||||||||||||||    
T  28510784 aacaagttgaaatatgtctttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttg 28510685  T
Q  212 taagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28510684 taagtgaaggtgatgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaat 28510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 28002220 - 28002481
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||  ||||  |||||||    
T  28002220 tgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaagaatactttttgtagaaaagtgc 28002319  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttg 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | ||| |||||||||||||||    
T  28002320 aacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttg 28002419  T
Q  212 taagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
     |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||    
T  28002420 gaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaat 28002481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 28132041 - 28132253
Alignment:
Q  61 acaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctg 160  Q
    |||||||||||||||||||||||| |||||    ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28132041 acaacaaagacatgcttcccaaagttaaaaatggttgttgtagtaaagtgcaacaagttgaaatatgtctttccaatctccgtatgtaaagagcttcctg 28132140  T
Q  161 agctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgt 260  Q
    ||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132141 agctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgt 28132240  T
Q  261 aatatttgaaaat 273  Q
    |||||||||||||    
T  28132241 aatatttgaaaat 28132253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 28183857 - 28184070
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    |||||||||||||| ||||||||||||| || || ||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28183857 tacaacaaagacattcttcccaaagctagaaaaagttgttgtagaaaagtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcct 28183956  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttg 259  Q
    |||||||||  |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||    
T  28183957 gagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctagaatgtg 28184056  T
Q  260 taatatttgaaaat 273  Q
    || |||||||||||    
T  28184057 tagtatttgaaaat 28184070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 27975442 - 27975655
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    ||||||||||||||||||||||||| |||||  | ||| ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  27975442 tacaacaaagacatgcttcccaaagttaaaaacacttgttgtaaaaaggtgcaacaagttgaaatatgtgtttccaatctccatatgtaaagagcttctt 27975541  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttg 259  Q
    |||||| |   |||  | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27975542 gagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgatagttg 27975641  T
Q  260 taatatttgaaaat 273  Q
    ||||||||||||||    
T  27975642 taatatttgaaaat 27975655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 28147825 - 28148037
Alignment:
Q  61 acaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctg 160  Q
    |||||||||||||||||||||||||||| |  | ||| |||   |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  28147825 acaacaaagacatgcttcccaaagctaagaatacttgttgtggaaaagtgcaacaagttgaaatatgtgtttccaatctccatatctaaagagcttcctg 28147924  T
Q  161 agctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgt 260  Q
    |||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||    
T  28147925 agctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttgatgatcacaaagtggagattccaaatctaaaacttgt 28148024  T
Q  261 aatatttgaaaat 273  Q
    |||||||||||||    
T  28148025 aatatttgaaaat 28148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 28053517 - 28053778
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||   ||||  |||| |||||||     
T  28053517 tgaagaatgcaacgagttgaagcatatttttgaagatgatttggagaatacagcaaagacatgcttcccaaagttaaatacaatttttgtagtaaagtgt 28053616  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttg 211  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||  |  ||     |||  | |||||||||||| |||||||||||||||||||||    
T  28053617 aacaagttgaaatatgtgtttccaatctccatatttagagagcttccccatttagtggctctagtgataagagaagcagatgagctagaggaaatatttg 28053716  T
Q  212 taagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  28053717 taagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaat 28053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 28063942 - 28064203
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||   ||||  |||| |||||||     
T  28063942 tgaagaatgcaacgagttgaagcatatttttgaagatgatttggagaatacagcaaagacatgcttcccaaagttaaatacaatttttgtagtaaagtgt 28064041  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttg 211  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||  |  ||     |||  | |||||||||||| |||||||||||||||||||||    
T  28064042 aacaagttgaaatatgtgtttccaatctccatatttagagagcttccccatttagtggctctagtgataagagaagcagatgagctagaggaaatatttg 28064141  T
Q  212 taagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  28064142 taagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaat 28064203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 28081837 - 28082046
Alignment:
Q  64 acaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagc 163  Q
    |||||||||||||| | |||||| |||  | ||| ||||  |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28081837 acaaagacatgctttcaaaagctgaaaacacttgttgtagcaaagtgtaacaagttgaaatatgtctttccaatctccgtatataaagagcttcctgagc 28081936  T
Q  164 taaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaat 263  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   | ||||| |    
T  28081937 taaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtgatgatcacaaagtggagattccatatctacgatttgtagt 28082036  T
Q  264 atttgaaaat 273  Q
    ||||||||||    
T  28082037 atttgaaaat 28082046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 28159332 - 28159506
Alignment:
Q  99 tgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagcta 198  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| || ||||||||    
T  28159332 tgtaataaagtgcaacaagttgaaatatgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagcta 28159431  T
Q  199 gaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||||||||  ||  |||| |||||||||||    
T  28159432 gaggaaatatttgtaattgaaggtgatgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaaat 28159506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 28481664 - 28481451
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    ||||||||||||||||||||||||||||| |  | ||| |||   |||||||||||||||||||||||| |||||||||||||||| ||||||||||||     
T  28481664 tacaacaaagacatgcttcccaaagctaacactacttgttgtggaaaagtgcaacaagttgaaatatgtgtttccaatctccatatctaaagagcttcca 28481565  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttg 259  Q
     ||||||||  ||| ||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||    
T  28481564 aagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttg 28481465  T
Q  260 taatatttgaaaat 273  Q
    || |||||||||||    
T  28481464 tagtatttgaaaat 28481451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 28147584 - 28147737
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||||    
T  28147584 tgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaatctaaaaagaattgttgtaataaagtgc 28147683  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagcta 165  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||||| ||||    
T  28147684 aacaagttgaaatatgtcttttcaatttccatatataaagaccttcctgcgcta 28147737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 251
Target Start/End: Original strand, 27918466 - 27918653
Alignment:
Q  64 acaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagc 163  Q
    ||||||| ||||||||||||||||  |    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27918466 acaaagatatgcttcccaaagctacgatctcttgctgtagtaaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagaccttcctgagc 27918565  T
Q  164 taaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatct 251  Q
    |||| | |||  | |||||||||||| ||||||| || |||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  27918566 taaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtgatgatcagaaagtggagattccaaatct 27918653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 28482072 - 28481909
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||  | |||  ||| ||||||||    
T  28482072 tgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatacaacaaagatatgcttcccaaagctacaaatacttgtagtagtaaagtgc 28481973  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctga 175  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||||||    
T  28481972 aacaagttgaaatatgtgtttccaatctccatatgtaaagaccttcctgagctatatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 11418825 - 11419034
Alignment:
Q  64 acaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagc 163  Q
    |||||||||||||||||||||||||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  11418825 acaaagacatgcttcccaaagctaaaaacacttgttgtagcaaagtgcaacaagttgaaatatgtttttccaatctccctgtgtaaagagcttcctgagc 11418924  T
Q  164 taaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaat 263  Q
    || ||  |||||| |||||||| ||| |||||||||||||||||||||||||||||| |||| |||| |||   |||||||| ||||| ||| || || |    
T  11418925 tatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatgatcatcagaaaagcgagattccgaatcttaaatttttagt 11419024  T
Q  264 atttgaaaat 273  Q
    ||||||||||    
T  11419025 atttgaaaat 11419034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 28481904 - 28481751
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| |||| ||||||||    
T  28481904 tgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaagaatacttggtgtagtaaagtgc 28481805  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagcta 165  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  28481804 aacaagttgaaatatgtcttttcaatttccatatgtaaagaccttcctgcgcta 28481751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 17746334 - 17746167
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    ||||||||||||||||||||||||||||| |  | |||||||   ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  17746334 tacaacaaagacatgcttcccaaagctaagaacacttgctgtgcaaaagtgcaacaagttgttatatgtctttccaatctccatatgtaaagagcttcct 17746235  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 227  Q
    |||||| |   ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17746234 gagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 19047654 - 19047487
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    ||||||||||||||||||||||||||||| |  | |||||||   ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  19047654 tacaacaaagacatgcttcccaaagctaagaacacttgctgtgcaaaagtgcaacaagttgttatatgtctttccaatctccatatgtaaagagcttcct 19047555  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 227  Q
    |||||| |   ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19047554 gagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 64 - 273
Target Start/End: Complemental strand, 27461203 - 27460997
Alignment:
Q  64 acaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagc 163  Q
    ||||||||||||||||||||||| |||  | ||  |||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27461203 acaaagacatgcttcccaaagcttaaaacacttattgtagtaaagtgcaatcagttgaaatatgtctttccaatgtccatatgtaaagagcttcctgagc 27461104  T
Q  164 taaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaat 263  Q
    || |   ||| |||||||||||||||   |||||||||||||||||||||||||||   |||||||| ||| |||||||||||||||| ||| ||||| |    
T  27461103 tagaggttctaatcataagagaagca---gagctagaggaaatatttgtaagtgaaaaagatgatcagaaactggagattccaaatctaaaacttgtagt 27461007  T
Q  264 atttgaaaat 273  Q
    ||||| ||||    
T  27461006 atttgtaaat 27460997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 27392438 - 27392230
Alignment:
Q  19 tgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagt 118  Q
    ||||| ||||||| |||| | |||||||||||||||||||||| ||  |    | ||||||||||||| |||  | ||| ||||  ||||||||| | ||    
T  27392438 tgcaaagagttgaagcatttgattgaagatgatttggagaatagaaagattgtacgcttcccaaagctcaaaacagttgttgtagaaaagtgcaaaatgt 27392339  T
Q  119 tgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtga 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  27392338 tgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcga 27392239  T
Q  219 aggtgatga 227  Q
    || ||||||    
T  27392238 agttgatga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 64 - 273
Target Start/End: Original strand, 28035522 - 28035731
Alignment:
Q  64 acaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagc 163  Q
    |||||||||||||||||||||||| ||  | |||||||| || | |||||  |||| ||||||||||||||||||||||||||||||||||||||  ||     
T  28035522 acaaagacatgcttcccaaagctacaaacacttgctgtagtacaatgcaatcagttaaaatatgtctttccaatctccatatgtaaagagcttcccaagt 28035621  T
Q  164 taaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaat 263  Q
    || |   ||| || |||||||||||| || || | || |||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||| |    
T  28035622 tagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtgatgatcagaaagtggagattccaaatctaaaatttgtagt 28035721  T
Q  264 atttgaaaat 273  Q
     |||||||||    
T  28035722 gtttgaaaat 28035731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 12146126 - 12146274
Alignment:
Q  72 atgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattat 171  Q
    |||||||||||||||||||  | |||  |||| || |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||| | | |    
T  12146126 atgcttcccaaagctaaaaacacttgtggtaaaaaggtgcaaaatgttaaaatatgtgtttccaatctccatatgtaaagagcttcctgagctacagttt 12146225  T
Q  172 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 220  Q
    || || |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146226 ctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 18026619 - 18026466
Alignment:
Q  72 atgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattat 171  Q
    |||||||||||||||||||  | ||| |||| ||| |||  | ||||||||| ||||||||||||||||||||| |||||||||||||||||||||   |    
T  18026619 atgcttcccaaagctaaaaacacttgttgtagtaacgtgtcataagttgaaaaatgtctttccaatctccatatataaagagcttcctgagctaaaggtt 18026520  T
Q  172 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgat 225  Q
     | ||||||  ||||||| |  |||||||||||||||||||| |||||| ||||    
T  18026519 ataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttgat 18026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 27347551 - 27347671
Alignment:
Q  107 agtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaat 206  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |   ||| |||||||||||| || | ||  | ||||||||    
T  27347551 agtgcaacatgttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaat 27347650  T
Q  207 atttgtaagtgaaggtgatga 227  Q
    ||||||| || ||||||||||    
T  27347651 atttgtatgtaaaggtgatga 27347671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26115094 - 26114998
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||   | |||| |||||||||||| ||||| |||| ||||||||    
T  26115094 acaagttgaaatatgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatatt 26114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26210202 - 26210106
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    |||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||| |||||||||||||    
T  26210202 acaagttgaaatatgtgtttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatatt 26210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26142406 - 26142310
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    |||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||   | || | |||||||||||| |||||||||||||||||||    
T  26142406 acaagttgaagtatgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatatt 26142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 220
Target Start/End: Original strand, 27376309 - 27376457
Alignment:
Q  72 atgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattat 171  Q
    |||||||||||||||| ||  | |||  |||| || |||||| | ||||||| ||||||||||||||||||||||| ||||||||||||||||| |   |    
T  27376309 atgcttcccaaagctacaaacacttgtggtaagaatgtgcaaaatgttgaaaaatgtctttccaatctccatatgtgaagagcttcctgagctagagagt 27376408  T
Q  172 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 220  Q
    ||  | |||| |||| || || |||||||||||||||||||| ||||||    
T  27376409 ctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaag 27376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26180711 - 26180615
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    |||||||||| ||||| |||||| ||||||| ||||||||| |||||||||||||   | || | |||||||||||| |||||||||||||||||||    
T  26180711 acaagttgaagtatgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatatt 26180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26237446 - 26237350
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    |||||||||||||| | |||||| ||||||| ||||||||| |||||||||||||   | || |||||||||||||| ||||| |||||||||||||    
T  26237446 acaagttgaaatatatgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatatt 26237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28147752 - 28147801
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28147752 tgaagaatgcaatgagttgaggcatattattgaagatgatttggagaata 28147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 26131674 - 26131578
Alignment:
Q  113 acaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 209  Q
    |||||||||| |||||||||||| ||||||| ||||||||| ||||| |||||||   | |||| ||||| |||||| |||||||||||| ||||||    
T  26131674 acaagttgaagtatgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatatt 26131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28183785 - 28183834
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  28183785 tgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 28183834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 28481736 - 28481687
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  28481736 tgaagaatgcaatgagttgaggcatattattgaagatgatatggagaata 28481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 27457132 - 27457030
Alignment:
Q  65 caaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagct 164  Q
    |||||||||||||| |||||||||||  | |||||||  | || | |||||| || |||| | |||||||| ||||||||  ||||||||||||||||||    
T  27457132 caaagacatgcttcacaaagctaaaaacacttgctgttgtgaactccaacaaattaaaatgtctctttccagtctccataactaaagagcttcctgagct 27457033  T
Q  165 aaa 167  Q
    |||    
T  27457032 aaa 27457030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 18026703 - 18026654
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  18026703 tgaagattgcaaagagttgaagcatattattgaagatgatttggagaata 18026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 27918393 - 27918442
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  27918393 tgaagaatgcaaagagttgaagtatattattgaagatgatttggagaata 27918442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 27975370 - 27975419
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  27975370 tgaagagtgcaaagagttgaagcatataattgaatatgatttggagaata 27975419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28081764 - 28081813
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||| | |||||||||||||||||||||||||||||    
T  28081764 tgaagaatgcaaagagttaaagcatattattgaagatgatttggagaata 28081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 26627626 - 26627776
Alignment:
Q  104 taaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagagga 203  Q
    |||| |||| |||||||||||||   ||||||| |||| | | | ||||||||||||||||| |   |||||| |||||||||||   ||| ||||||||    
T  26627626 taaactgcaccaagttgaaatattgatttccaacctccgtttctcaagagcttcctgagctagaggttctgatgataagagaagctggtgaactagagga 26627725  T
Q  204 aatatttgtaagtgaa---ggtgatgatcacaaagtggagattccaaatct 251  Q
    ||||||   || ||||   | ||||||||| ||||| ||||||||||||||    
T  26627726 aatattcaaaaatgaagatgatgatgatcagaaagtcgagattccaaatct 26627776  T

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Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 12146049 - 12146088
Alignment:
Q  19 tgcaatgagttgaggcatattattgaagatgatttggaga 58  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  12146049 tgcaatgagttgaagcatatgattgaagatgatttggaga 12146088  T

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Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27376232 - 27376274
Alignment:
Q  19 tgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||    
T  27376232 tgcaaggagttgaagcatatgattgaagatgatttggagaata 27376274  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 11418752 - 11418801
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||||| |||||| ||||||||||| ||||||||||    
T  11418752 tgaagaatgcaaagagttgaagcatatgattgaagatgacttggagaata 11418801  T

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Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 17746406 - 17746357
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| |||||||  |||||| |||||||||||||||||||||    
T  17746406 tgaagaatgcaaagagttgacacatatttttgaagatgatttggagaata 17746357  T

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Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 19047726 - 19047677
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| |||||||  |||||| |||||||||||||||||||||    
T  19047726 tgaagaatgcaaagagttgacacatatttttgaagatgatttggagaata 19047677  T

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Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 27347472 - 27347513
Alignment:
Q  19 tgcaatgagttgaggcatattattgaagatgatttggagaat 60  Q
    ||||| ||||||| |||||| |||||||||||||||||||||    
T  27347472 tgcaaagagttgaagcatatgattgaagatgatttggagaat 27347513  T

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Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 28131968 - 28132017
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| || |||| |||||| ||||||||||||||||||||||    
T  28131968 tgaagaatgcaaagaattgaagcatataattgaagatgatttggagaata 28132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 26180823 - 26180775
Alignment:
Q  13 gaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    ||||| ||||| ||||||| |||||| |||||||||||||||||| |||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaagatgatttggaggata 26180775  T

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Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 26210314 - 26210266
Alignment:
Q  13 gaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    ||||| ||||| ||||||| |||||| |||||||||||||||||| |||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaagatgatttggaggata 26210266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 26237558 - 26237510
Alignment:
Q  13 gaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    ||||| ||||| ||||||| |||||| |||||||||||||||||| |||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaagatgatttggaggata 26237510  T

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Target: scaffold0257 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 17371 - 17632
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaatacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgc 111  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||    |||||||| ||||||||    
T  17371 tgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatacaacaaagatatgcttcccaaagctacaatctcttgctgtagtaaagtgc 17470  T
Q  112 aacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttg 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||| |||||||||||||||||| ||    
T  17471 aacaagttgaaatatgtgtttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctg 17570  T
Q  212 taagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
     |||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||    
T  17571 caagtgaaggtgatgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaat 17632  T

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Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 8019890 - 8020064
Alignment:
Q  99 tgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagcta 198  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019890 tgtagtaaagtgcatcaagttgaaccatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagcta 8019989  T
Q  199 gaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019990 gaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaat 8020064  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 22391264 - 22391420
Alignment:
Q  105 aaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaa 204  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |   |||  | ||||| ||||||||| |||||||||||    
T  22391264 aaagtgcaaaatgttaaaatatgtctttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaa 22391363  T
Q  205 atatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 261  Q
    ||||||||| ||||||  | |||||| |||||  | || |||||||| |||||||||    
T  22391364 atatttgtatgtgaagaaggtgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 22391147 - 22391196
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| || |||| |||||||||||||||||||||||||||||    
T  22391147 tgaagaatgcaaagaattgaagcatattattgaagatgatttggagaata 22391196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 8693497 - 8693284
Alignment:
Q  60 tacaacaaagacatgcttcccaaagctaaaagaaattgctgtaataaagtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcct 159  Q
    |||||||||||||||||||||||||||| ||    |||  || ||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  8693497 tacaacaaagacatgcttcccaaagctagaacggcttgtagtgataaagtgcgacatgttgaaatatgtctttccagtctccatatgtaacgagcttcct 8693398  T
Q  160 gagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttg 259  Q
    |||||||||  ||||||||||||||||||| ||||||| || |||||||||| ||||||||||  |||| | ||||| ||||||||||||||  ||  ||    
T  8693397 gagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcgtgatgagaaagtcgagattccaaatctagaatatg 8693298  T
Q  260 taatatttgaaaat 273  Q
    || |||||||||||    
T  8693297 tagtatttgaaaat 8693284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8693572 - 8693523
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  8693572 tgaagaatgcaaagagttgaagcatattattgaagatgatttggagaata 8693523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 54840 - 54687
Alignment:
Q  108 gtgcaacaagttgaaatatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaata 207  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| |||||||||||||||||    
T  54840 gtgcaacaagttggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaata 54741  T
Q  208 tttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 261  Q
    |||||| ||||||  | |||||| |||||  |  ||||||||||||||||||||    
T  54740 tttgtatgtgaagaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 54960 - 54911
Alignment:
Q  12 tgaagagtgcaatgagttgaggcatattattgaagatgatttggagaata 61  Q
    |||||| ||||| ||||||| |||||| ||||||||||||||||||||||    
T  54960 tgaagaatgcaaagagttgaagcatatgattgaagatgatttggagaata 54911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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