View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11538_low_92 (Length: 275)
Name: NF11538_low_92
Description: NF11538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11538_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 34140023 - 34140270
Alignment:
| Q |
18 |
tcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctcttt |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
34140023 |
tcttccaaggccaagagctaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatacttgaagaattcttcaaacctcttt |
34140122 |
T |
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| Q |
118 |
gcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140123 |
gcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttga |
34140222 |
T |
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| Q |
218 |
catcaattttaaaaacaacccattagtttaaaagttaatctacctttg |
265 |
Q |
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| T |
34140223 |
catcaattttaaaaacaacccattagtttaaaagttaatctacctttg |
34140270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 34131184 - 34131398
Alignment:
| Q |
28 |
ccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgcttcaagtc |
127 |
Q |
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| T |
34131184 |
ccaagtgctaggtgagggtaagggcatggaggatagtggttgaatctaataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtc |
34131283 |
T |
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| Q |
128 |
ctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaatttt |
227 |
Q |
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| T |
34131284 |
ctaagcttagagctattagctccagcaacctatatgccagcttttccacctcttgaatatactcttcaagtatagccctgctcatgtagacatcaatttt |
34131383 |
T |
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| Q |
228 |
aaaaacaacccatta |
242 |
Q |
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| T |
34131384 |
aaacacaacccatta |
34131398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 34136869 - 34137079
Alignment:
| Q |
22 |
ccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgctt |
121 |
Q |
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|||| ||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||| ||||||||||||||||||| |
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| T |
34136869 |
ccaacgccgagagctaggtgagggtaagggcatggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgctt |
34136968 |
T |
|
| Q |
122 |
caagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatc |
221 |
Q |
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| T |
34136969 |
caactcctaagctcaaagctattagctcaagcaacttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacata |
34137068 |
T |
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| Q |
222 |
aattttaaaaa |
232 |
Q |
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||||||||||| |
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| T |
34137069 |
aattttaaaaa |
34137079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 34142679 - 34142860
Alignment:
| Q |
28 |
ccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatcct---tgtagaattcttcaaacctctttgcttcaa |
124 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| | ||| | ||||||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
34142679 |
ccaagagcaaggtgagggtaagggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaa |
34142778 |
T |
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| Q |
125 |
gtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactct |
206 |
Q |
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||||||||| | |||||| ||||| | ||| || ||| |||||||||||||||| |||||||||| || |||||||| |
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| T |
34142779 |
ctcctaagctaagagctatgagctctagcaacgtaaaggctagcttttccatctctttaatatactctttaagaataactct |
34142860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 34126032 - 34126244
Alignment:
| Q |
18 |
tcttccaaggccaagagcaaggtgagggtaagggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctcttt |
117 |
Q |
| |
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|||||| | ||||||||| || | ||| |||| ||||||||||||| |||| ||| | | ||||||| ||||||| ||||||||||||||||| || |
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| T |
34126032 |
tcttcccatgccaagagctagctcaggagaaggacatggaggatagtgattgattctaaacacgctagttgtatccttgaagaattcttcaaacctcatt |
34126131 |
T |
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| Q |
118 |
gcttcaagtcctaagcttaaagctataagctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttga |
217 |
Q |
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|||||||| |||||||| |||||||| | ||||| |||||| ||||| ||||||||||| | |||||||||||||||||| || |||||||||| |
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| T |
34126132 |
gcttcaagccctaagctcaaagctattaactccagcaacttagaggccaaattttccatctccttaatatactcttcaattatattcctgctcatgttga |
34126231 |
T |
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| Q |
218 |
catcaattttaaa |
230 |
Q |
| |
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||| ||||||||| |
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| T |
34126232 |
cattaattttaaa |
34126244 |
T |
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