View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11539_high_1 (Length: 833)
Name: NF11539_high_1
Description: NF11539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11539_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 15 - 818
Target Start/End: Complemental strand, 36374171 - 36373386
Alignment:
| Q |
15 |
aaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaacatatttgacttcaac |
114 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||||||||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||| |
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|
| T |
36374171 |
aaaaacaaagtatttatatcatatatat-gtgagtgtaaaacttctgtacactgcctataaatcataactgtcatatcattaaacatatttgacttcaac |
36374073 |
T |
|
| Q |
115 |
cataaatggttcaacagtcaatcaaacta-----tgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatat |
209 |
Q |
| |
|
||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374072 |
cataaatggttcaactgtcaatcatatgactgactgattttgttgacagtgtaaaacattttatacagataggatatcaaaactaaactaaaaaacatat |
36373973 |
T |
|
| Q |
210 |
gatatcacataacaaaagacaagagacggggaaagcaaatttcacagtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccat |
309 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36373972 |
gatatcacat--------------------gaaagcaaatttca--gtcacacacctcatttccatcaagaagataacttgatgtcaaagctgtttccat |
36373895 |
T |
|
| Q |
310 |
ttcttcccatatgttagccaaatcatcaggattttctacctcatcaccgctttccaatacgttttctttctcctgctcaaactgtctttcttcactgata |
409 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373894 |
ttcttcccacatgtcggccaaatcatcaggattttctacctcatcacctttttccgatacgttttctttctcctgctcaaactgtctttcttcactgata |
36373795 |
T |
|
| Q |
410 |
gttggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
36373794 |
gttggatcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgat |
36373695 |
T |
|
| Q |
510 |
cctgttcttcatgatcatcgatactgtttgtcgttttcctttgaacaccttctttggattgtatagcttcccataaagttattaaacgcatatgctcctt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||| |
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|
| T |
36373694 |
cctgttcttcatgatcatcgatactgtttgtcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctcctt |
36373595 |
T |
|
| Q |
610 |
acacaaccgccttctcttaagcttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactca |
709 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36373594 |
acacaaccgccttctcttaaacttctttgtgcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgataatggagactca |
36373495 |
T |
|
| Q |
710 |
ttgtatggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcac |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36373494 |
ttgtatggctcatgatttaacacatcaacagcgttctttcctttagcatcagtcaactgattttccttattaacctttggaccactcttaccatcatcac |
36373395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 256 - 377
Target Start/End: Original strand, 32251531 - 32251652
Alignment:
| Q |
256 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
355 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||| | | | |||||||||||| ||||||| |||||||| |
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|
| T |
32251531 |
gtcacacaccgcagttccatcaagaagataacttgatgtcaaagctgtattcatttcttcccacaaggcatccaaatcatcagcattttcttcctcatca |
32251630 |
T |
|
| Q |
356 |
ccgctttccaatacgttttctt |
377 |
Q |
| |
|
|||||| | |||| ||||||| |
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|
| T |
32251631 |
tcgcttttcgatactttttctt |
32251652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
416 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
515 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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|
| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
|
| Q |
516 |
cttcatga |
523 |
Q |
| |
|
|||||||| |
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|
| T |
32251806 |
cttcatga |
32251813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 32229039 - 32229101
Alignment:
| Q |
256 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttccca |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||| |
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|
| T |
32229039 |
gtcacacacctcagttccatcaagaagataacttgatgtcgaagttgtatccatttattccca |
32229101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 8845911 - 8846017
Alignment:
| Q |
256 |
gtcacacacctcacttccatcaagaagataacttgatgtcaaagctgtttccatttcttcccatatgttagccaaatcatcaggattttctacctcatca |
355 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| || || ||| || |||||||||||||| ||| || ||| ||||||||||||||| || ||||| |
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| T |
8845911 |
gtcacaaacctcagttccatcaagaagacaacttgctgccatagcagtatccatttcttcccaaatggcagacaagtcatcaggattttcttccccatca |
8846010 |
T |
|
| Q |
356 |
ccgcttt |
362 |
Q |
| |
|
|||||| |
|
|
| T |
8846011 |
tcgcttt |
8846017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 12069974 - 12070085
Alignment:
| Q |
15 |
aaaaacaacgtatttaaatcatatatattgtgagtgtaaaacttctttacaccacctatatattataattgtcatatcattaaacatatttgacttcaac |
114 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| | ||||| | | |||| |||| || |||||||||| ||| ||||||||||||||||| ||| |
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|
| T |
12069974 |
aaaaacaaagtatttaattcatatatattgtgact--aaaacatttgcacactgtctatcaatcataattgtcacatccttaaacatatttgacttgaac |
12070071 |
T |
|
| Q |
115 |
cataaatggttcaa |
128 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12070072 |
cataaatggttcaa |
12070085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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