View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11539_high_6 (Length: 243)
Name: NF11539_high_6
Description: NF11539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11539_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 39941880 - 39941662
Alignment:
| Q |
18 |
agtagatacactaaccacccgaggcggaggaggtggtggcggaggtctaggtggaggaagtgtaagtgaatcccttgagtcgtttgaatgaagatgcgtc |
117 |
Q |
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| T |
39941880 |
agtagatacactaaccacccgcggcggaggaggtggtggcggaggtctaggtggaggaagtgtaagtgaatcccttgagtcgtttgaatgaagatgcgtc |
39941781 |
T |
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| Q |
118 |
aaattcggcgccggtggcggcgatgagaattttggccttctaggagaaccgtgctgaaaaagtgttgacggagacgccggagcatgctttatagacggta |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39941780 |
aaattcggcgccggtggcggcgatgagaatttcggccttctaggagaaccgtgctgaaaaagtgttgacggcgacgccggagcatgctttatagacggta |
39941681 |
T |
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| Q |
218 |
tcatgacgcgtttcatctc |
236 |
Q |
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||||||||||||||||||| |
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| T |
39941680 |
tcatgacgcgtttcatctc |
39941662 |
T |
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