View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11539_low_2 (Length: 574)
Name: NF11539_low_2
Description: NF11539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11539_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 50234676 - 50235231
Alignment:
| Q |
1 |
tatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctccagctccatatcagttgccatgagaagaccgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
50234676 |
tatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctcaagctccatatcagctgccatgagaagaccgc |
50234775 |
T |
|
| Q |
101 |
ggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50234776 |
ggtgaattgccgagagctcagcaagtagaatgtcagtggaatctgcaatgaaaccggagaagccagagaggtataagccggcactgttacgaataactcc |
50234875 |
T |
|
| Q |
201 |
cccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcagaa |
300 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
50234876 |
cccaaagcctgcacgaattggagttcatgaacaactcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcagga |
50234975 |
T |
|
| Q |
301 |
gttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtggaagttaagccgagttagagaccaagtttcttggctaaggc |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
50234976 |
gttgaatcaccgttgctttgaaaacttgctttgattgtatcggcataattttggatgtggaagttaagccgagttggagaccaagtttcttggctaaggc |
50235075 |
T |
|
| Q |
401 |
acatcatgtttcgatgtctccatgaccaccaaagccctgcaaagaacgtaaaggagcgcggacctgttgaggaagttttgatccagttgtacgcacagtt |
500 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||| |||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
50235076 |
acatcatgtttcgatgtctccatgtccaccaaagccctacaaagaacgtgatggagcgcgaacctgttgagaaagttttgatctagttgtacgcacagtt |
50235175 |
T |
|
| Q |
501 |
ttcagagaagaaatcaggacttgtgaagccgattttttgccagattgtgatggagt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
50235176 |
ttcagagaagaaatcaggacttgtgaagccgattttttgctagattgtgatggagt |
50235231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 46954314 - 46954600
Alignment:
| Q |
5 |
ttgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctccagctccatatcagttgccatgagaagaccgcggtg |
104 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||| |||||||||||||| |
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|
| T |
46954314 |
ttgaagcttgacccgtaatgagattaattgagagaagcgaaaccgagtagcaaaccaattcctcataatccatatctactgccataagaagaccgcggtg |
46954413 |
T |
|
| Q |
105 |
aattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactccccca |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46954414 |
aattgccgagagctcagcaagcagaatgtcagtggaatctgcaatgaaaccggagaagccagagaggtataaaccggcactgttacgaataactccccca |
46954513 |
T |
|
| Q |
205 |
aagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatgattattgctgttccatttgaccata |
291 |
Q |
| |
|
|| |||| |||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
46954514 |
aaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattattactgttccatttgaccata |
46954600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 172 - 363
Target Start/End: Original strand, 46954599 - 46954790
Alignment:
| Q |
172 |
tataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatgattat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
46954599 |
tataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat |
46954698 |
T |
|
| Q |
272 |
tgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtggaag |
363 |
Q |
| |
|
| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
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|
| T |
46954699 |
tactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgatagtatcagcagaattctggatgtggaag |
46954790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 26701906 - 26702068
Alignment:
| Q |
100 |
cggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactc |
199 |
Q |
| |
|
||||||||||| | |||||| || || | ||| ||| | || ||||||||||||||||| |||||||||||||| | ||| ||||||| ||||||| || |
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|
| T |
26701906 |
cggtgaattgcggtgagctctgcgagcaaaatatcagtagagtctgcaatgaaaccggagaagccagagaggtaaaggccgacactgtttcgaataattc |
26702005 |
T |
|
| Q |
200 |
ccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagt |
262 |
Q |
| |
|
||||| | |||| |||| ||||||| || |||||||||||||||||||| || ||||| |||| |
|
|
| T |
26702006 |
ccccataacctgcgcgagttggagtaccggaacaactcccatccacatttagaatatgacagt |
26702068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 37152386 - 37152345
Alignment:
| Q |
16 |
cctgtaatgaggttaattgagagaagcgagtccgagtagcaa |
57 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
37152386 |
cctgtaatgaggttgatggagagaagggagtccgagtagcaa |
37152345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 21789183 - 21789131
Alignment:
| Q |
16 |
cctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctc |
68 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
21789183 |
cctgtaataagattgatggagagaagcgagtccgagtagcaagccaactcctc |
21789131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 26701811 - 26701863
Alignment:
| Q |
5 |
ttgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaa |
57 |
Q |
| |
|
|||| ||||||||||||||||| || || |||||||| ||||| ||||||||| |
|
|
| T |
26701811 |
ttgaagcttgacctgtaatgagattgatggagagaagagagtcagagtagcaa |
26701863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 11052790 - 11052549
Alignment:
| Q |
5 |
ttgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctccagctccatatcagttgccatgagaagaccgcggtg |
104 |
Q |
| |
|
|||| ||||||||||||||||| || || |||||||| ||||| ||||||||| ||| || || | |||| || | || ||||||| | | ||||| |
|
|
| T |
11052790 |
ttgaagcttgacctgtaatgagattgatggagagaagagagtcagagtagcaagccatttcttcaaatcccatgtctgaagctatgagaaaagcccggtg |
11052691 |
T |
|
| Q |
105 |
aattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactccccca |
204 |
Q |
| |
|
||||| | ||||| ||| || | ||| ||| | || ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| |||||| |
|
|
| T |
11052690 |
aattgtggtgagcttagcgagcaaaatatcagtagagtctgcaatgaaaccggagaagccagagaggtaaaaaccggcactattttgaataac-ccccca |
11052592 |
T |
|
| Q |
205 |
aagcctgtgcgaattggagttcctgaacaactcccatccacat |
247 |
Q |
| |
|
|| |||| |||| ||||||| || ||||||||| |||| |||| |
|
|
| T |
11052591 |
aaacctgcgcgagttggagtaccagaacaactctcatctacat |
11052549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 449
Target Start/End: Complemental strand, 34361326 - 34361019
Alignment:
| Q |
142 |
tctgcaatgaaaccggaaaagccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccat |
241 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||| ||||||||||| ||||||| ||| ||| | |||| |||| ||||| | || |||||||| |||| |
|
|
| T |
34361326 |
tctgcgatgaaaccggagaagcaagagaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccat |
34361227 |
T |
|
| Q |
242 |
ccacattaaggatatggcagtgatgattattgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtatt |
341 |
Q |
| |
|
| ||||| || || || ||| |||| ||||| || |||||| | ||||| |||||| || | ||| | || ||||||| || | ||| || |||| |
|
|
| T |
34361226 |
ctacatttagaatgtgacagagatggttattactattccatctaaccattcgatcatgaggagtggcactgctgttttgaaagctggattttatggtatc |
34361127 |
T |
|
| Q |
342 |
ggcagagttctggatgtggaagttaagccgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccaccaaagccctgca |
441 |
Q |
| |
|
||||| ||||| |||| ||| |||| || || || |||||||| || | |||||||||||||||||| |||| ||||||| |||||| || ||||| |
|
|
| T |
34361126 |
cgcagaattctgaatgtagaaactaagtcgcgtaagggaccaagtatcattgctaaggcacatcatgttgtgatgcctccatgtccaccatagacctgct |
34361027 |
T |
|
| Q |
442 |
aagaacgt |
449 |
Q |
| |
|
|||||||| |
|
|
| T |
34361026 |
aagaacgt |
34361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1447088 - 1447049
Alignment:
| Q |
1 |
tatattgatgcttgacctgtaatgaggttaattgagagaa |
40 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1447088 |
tatattgatgcttgacccgtaacgaggttaattgagagaa |
1447049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 34361463 - 34361407
Alignment:
| Q |
5 |
ttgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaacca |
61 |
Q |
| |
|
|||| ||||||||||||||||| || || |||||||| ||||| ||||||||| ||| |
|
|
| T |
34361463 |
ttgaggcttgacctgtaatgagattgatggagagaagagagtcagagtagcaagcca |
34361407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 9792776 - 9792715
Alignment:
| Q |
370 |
cgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccacca |
431 |
Q |
| |
|
|||||||||||||||||||| | | |||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
9792776 |
cgagttagagaccaagtttcgttaccaaggtacatcaagtttcgatgtctccatgtccacca |
9792715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 2961180 - 2961128
Alignment:
| Q |
16 |
cctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctc |
68 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
2961180 |
cctgtaataagattgatggagagaagcgagtccgagtagcaagccaactcctc |
2961128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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