View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11539_low_4 (Length: 393)
Name: NF11539_low_4
Description: NF11539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11539_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 36031235 - 36031612
Alignment:
| Q |
18 |
cacatttgagctgcaaaatcacatctcatgaataagtgcaaagtcgtttcctcaatgttgtcacacaaattatctaaagacatcttgaggctcaatgata |
117 |
Q |
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| T |
36031235 |
cacatttgagctgcaaaatcacatctcatgaataagtgcaaagtcgtttcctcaatgttgtcacacaaattatcaaaagacatcttgaggttcaatgata |
36031334 |
T |
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| Q |
118 |
aactccccaatgaaat--------------tagtaggaattattcttatctaaaaagaagctatactgatgaaaatcaattacctaagatggtgtaaaac |
203 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031335 |
aactccccaatgaaataagttagaattatttagtaggaattattcttatctaaaaagaagctatactgatgaaaatcaattacctaagatggtgtaaaac |
36031434 |
T |
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| Q |
204 |
tagagaattgctttttcaacacaaattactctcaacctaaaaggcttctcccaagaagtttaccttcatggaaaacataggccgatttcaccgagaaacc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031435 |
tagagaattgctttttcaacacaaattactctcaacctaaaaggcttctcccaagaagtttaccttcatggaaaacataggccgatttcaccgagaaacc |
36031534 |
T |
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| Q |
304 |
tataccggtatctggcgcctccattccttgaccttccacatgaaatatagaaactaaattcataagttttgtggccta |
381 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031535 |
tataccggtatccggcgcctccattccttgaccttccacatgaaatatagaaactaaattcataagttttgtggccta |
36031612 |
T |
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