View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11539_low_5 (Length: 300)
Name: NF11539_low_5
Description: NF11539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11539_low_5 |
 | |
|
| [»] scaffold0006 (10 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0355 (2 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0783 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 214030 - 213766
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
214030 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttgaaaacaaaatgattgatacatcacacacgtataaacaccccctaaaatgtcatggt |
213931 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaatccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgt |
217 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
213930 |
tgaatctagaaattacacaaaaaggtaacatagtaaaatccatcgacgtcacct---------acgagagtaaaattacaatacaaggtacttgacatgt |
213840 |
T |
|
| Q |
218 |
aagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctttgc |
291 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
213839 |
aaaccgatcaaataacaacataaatagaaaattaaagaaatttttcccaacaccaatataaatagctcctttgc |
213766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 192404 - 192131
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||| | ||||| ||||||| ||||||| || ||||||||| ||| |
|
|
| T |
192404 |
atagcatgcatgccatttgtccaaataaaaatgttcaatttttcgaaataaaaagagtgttccatcaaacacgtagaaacacccccaaaaatgtcatggt |
192305 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| ||| ||||||| || | | | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
192304 |
tgaatttggtaattaaacaaataggtaacataataaaagaatccctcgacgtcacacaacggagcaatgagagtaaaattccaatacaaggtacttgaca |
192205 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
192204 |
tgcaagccaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacaccaatataaatagctcctt |
192131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 122704 - 122434
Alignment:
| Q |
21 |
gcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgata--catcacacacgtataaacacctcctaaaatgtcacggtt |
118 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| |||| |||| |||||||| ||||| ||||| | ||||||| |||||||||||| | || |
|
|
| T |
122704 |
gcatacataccatttgtccaaatagaaatgttcaatttttagaaataaaaagagtgatatccatcaaacacgcagaaacaccacctaaaatgtcatgttt |
122605 |
T |
|
| Q |
119 |
gaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacat |
215 |
Q |
| |
|
|||| | ||||| ||||||| |||||||||||||| ||| |||||| |||| ||||| ||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
122604 |
gaatatgacaatta-acaaatatgtaacatagtaaaagaatccttcgacgctacccaccagagcaatgagagtaaaattacaatagaaggtacttgacat |
122506 |
T |
|
| Q |
216 |
gtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |||||||| |||| | ||| ||||||||||||||||||| |
|
|
| T |
122505 |
gcaagccaatcaaataacatcataaatagaaaa-taaagaaagtctttcaaacgccaatataaatagctcctt |
122434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 127161 - 126883
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaaca---cctcctaaaatgtcac |
114 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| ||||| | ||||| ||| ||| ||||| || || ||||||||| |
|
|
| T |
127161 |
atagcatgcataccatctgttcaaatagaaatgttcaatttttcgaaataaaaagagtgttccatcaaacatgtagaaacagtaccccccaaaatgtcat |
127062 |
T |
|
| Q |
115 |
ggttgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttg |
211 |
Q |
| |
|
|||||||| | | ||||| |||||||||||||||||||||| ||| ||||| | ||| | | | ||| |||||||||||| |||||||||||||||| |
|
|
| T |
127061 |
ggttgaatttttcaattaaacaaataggtaacatagtaaaagaatccctcgacatcaccaaacggagcaatgagagtaaaattccaatacaaggtacttg |
126962 |
T |
|
| Q |
212 |
acatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacacca--atataaatagctcctt |
288 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||| |||||| ||| ||| |||||||||||||||| |
|
|
| T |
126961 |
tcatgcaagccaatcaaataacaacataaataaaaaataaaagaaagtcttccaaaccccaatatataaatagctcctt |
126883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 233769 - 233540
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
233769 |
atagcatgcataccatttgtccaaatagaaatgttcagtttttcgaaacaaa--gagtgatccatcaaacacatagaaacacc-cctaaaatgtcacggt |
233673 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagt---aaaatccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||| | ||||| | |||| ||||||||| || |||||||||||| |||||||| |||||||||| |
|
|
| T |
233672 |
tgaatttgtcaattaaacaaataggtaacatagtcaaagaatccctttacgtaacctaccagagcactgagagtaaaattacaatacaa-gtacttgaca |
233574 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaat |
249 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| |
|
|
| T |
233573 |
tgcaagccaatcaaataacaacat-aatagaaaat |
233540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 77910 - 77802
Alignment:
| Q |
183 |
gagagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatag |
282 |
Q |
| |
|
|||| ||||||| ||| ||||||| ||||||||| |||||||||||||| |||||||||| |||||| ||| ||| |||||| |||||| |||||||||| |
|
|
| T |
77910 |
gagaataaaattacaacacaaggtccttgacatgcaagccaatcaaatagcaacataaattgaaaataaaataaagtcttccaaacaccgatataaatag |
77811 |
T |
|
| Q |
283 |
ctcctttgc |
291 |
Q |
| |
|
||||||||| |
|
|
| T |
77810 |
ctcctttgc |
77802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 78052 - 77952
Alignment:
| Q |
22 |
catgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggttgaa |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| |||| ||||||| ||||| ||| | | ||||||| |||||||||||| |||||| |
|
|
| T |
78052 |
catgcataccatttgtccaaatagaaatgttcaattttccaaaataaaaagagtgatccatcaaacatggagaaacaccccctaaaatgtcatagttgaa |
77953 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
77952 |
t |
77952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 64270 - 64192
Alignment:
| Q |
185 |
gagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttc |
263 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || || ||| ||||||| ||||| |
|
|
| T |
64270 |
gagtaaaattccaatacaaggtacttgacatgcaagccaatcaaataacaacatcaaaaggaaacaaaagaaagtcttc |
64192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 3645 - 3600
Alignment:
| Q |
240 |
aatagaaaattaaagaaattcttcccaacaccaatataaatagctc |
285 |
Q |
| |
|
|||||||||| ||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
3645 |
aatagaaaataaaagaaagtcttccaaacgccaatataaatagctc |
3600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 235396 - 235347
Alignment:
| Q |
239 |
aaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
235396 |
aaatagaaattaaaagaaagtcttccaaacaccaatataaattgctcctt |
235347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 123701 - 123449
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
123701 |
atagcatgtatatcatttgtccaaatagaaatgtttaatttttcgaaacaaaatgagtgatacatcacacacgtataaacactccctaaaatgtcatggt |
123602 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaatccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgt |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
123601 |
tgaatctagaaattatacaaataggtaacatagtaaaatccat---------------------cgagagtaaaattacaatacaaggtacttgacatgt |
123523 |
T |
|
| Q |
218 |
aagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctttgc |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123522 |
aagccaatcaaataacaacataaattgaaaattaaagaaattcttcccaacaccaatataaatagctcctttgc |
123449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 21819590 - 21819324
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
21819590 |
atagcatgcataccatttgtccaaatagaaatgttcagtttttcgaaacaaa--gagtgatccatcaaacacatagaaacacc-cctaaaatgtcacggt |
21819494 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagt---aaaatccatcgacgtta-cctaccagttcaacgagagtaaaatttcaatacaaggtacttgac |
213 |
Q |
| |
|
||||| | | ||||| |||||||||||||||||| | ||||| ||||||| | |||||||| | |||||||||||| |||||||| ||||||||| |
|
|
| T |
21819493 |
tgaatttgtcaattaaacaaataggtaacatagtcaaagaatccctcgacgtaaccctaccagagctgtgagagtaaaattacaatacaa-gtacttgac |
21819395 |
T |
|
| Q |
214 |
atgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctc |
285 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
21819394 |
atgcaagccaatcaaataacaacat-aatagaaaataaaagaaagtcttccaaacgccaatataaatagctc |
21819324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 22268168 - 22268301
Alignment:
| Q |
154 |
aatccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaa |
253 |
Q |
| |
|
||||| ||||||| |||||||| ||| |||| ||||||| ||||||||||| ||||||||| || |||||||||| |||||||||||| |||| ||| |
|
|
| T |
22268168 |
aatccctcgacgtaacctaccacaacaatgagaataaaattacaatacaaggtccttgacatgaaa-ccaatcaaattacaacataaataataaataaaa |
22268266 |
T |
|
| Q |
254 |
gaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||| |
|
|
| T |
22268267 |
gaaagtcttccaaataccaatataaatagctcctt |
22268301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 21835630 - 21835581
Alignment:
| Q |
239 |
aaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
21835630 |
aaatagaaattaaaagaaagtcttccaaacaccaatataaattgctcctt |
21835581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 20760172 - 20760441
Alignment:
| Q |
22 |
catgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggttgaa |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| | ||||| ||||||| ||||||| || |||||||| ||||||| |
|
|
| T |
20760172 |
catgcatatcatttgtccatatagaaatgttcaatttttcgaaataaaaagagtgttccatcaaacacgtagaaacaccccccaaaatgtcgtggttgaa |
20760271 |
T |
|
| Q |
122 |
tctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgta |
218 |
Q |
| |
|
| | ||||| |||||||||||||||| ||||| ||| ||||||| | | | | ||| |||||||||||| ||||||||||||||||||||| | |
|
|
| T |
20760272 |
tttggtaattaaacaaataggtaacataataaaagaatccctcgacgtcaaaaaacggagcaatgagagtaaaattccaatacaaggtacttgacatgca |
20760371 |
T |
|
| Q |
219 |
agccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||| |||||||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
20760372 |
agctaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacaccaatataaatagctcctt |
20760441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 20384763 - 20384490
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||||||| |||| ||||| | ||||| |||| || ||||||| || ||||||||| || |
|
|
| T |
20384763 |
atagcatgcataccatttgtccatataaaaatgttcaatttttcgaaataaaaagagtgttccatcaaacacatagaaacaccccccaaaatgtcatagt |
20384664 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| ||| ||||||| ||| | | | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
20384663 |
tgaatttggtaattaaacaaataggtaacataataaaagaatccctcgacgtcacccaacggagcaatgagagtaaaattccaatacaaggtacttgaca |
20384564 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
20384563 |
tgcaagccaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacacgaatataaatagctcctt |
20384490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 20451577 - 20451843
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
20451577 |
atagcatgcataccatttgtccaaatataaatgttcagattttcgaaacaaa--gagtgattcatcaaacacatagaaacacc-cctaaaatgtcacggt |
20451673 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
| ||| | ||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| || ||||||||| |||||||| |||||||||| |
|
|
| T |
20451674 |
ttaatttggcaattaaacaaataggtaacatagtaaaagaatccctcgacgtaacctaccagagcaatgaaagtaaaattacaatacaatgtacttgaca |
20451773 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctc |
285 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
20451774 |
tgcaagctaatcaaataacaacat-aatagaaaataaaagaaagtcttccagacgccaatataaatagctc |
20451843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 20538215 - 20538481
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
20538215 |
atagcatgcataccatttgtccaaatataaatgttcagattttcgaaacaaa--gagtgattcatcaaacacatagaaacacc-cctaaaatgtcacggt |
20538311 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
| ||| | ||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| || ||||||||| |||||||| |||||||||| |
|
|
| T |
20538312 |
ttaatttggcaattaaacaaataggtaacatagtaaaagaatccctcgacgtaacctaccagagcaatgaaagtaaaattacaatacaatgtacttgaca |
20538411 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctc |
285 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
20538412 |
tgcaagctaatcaaataacaacat-aatagaaaataaaagaaagtcttccatacgccaatataaatagctc |
20538481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 20544076 - 20544342
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
20544076 |
atagcatgcataccatttgtccaaatataaatgttcagattttcgaaacaaa--gagtgattcatcaaacacatagaaacacc-cctaaaatgtcacggt |
20544172 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
| ||| | ||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| || ||||||||| |||||||| |||||||||| |
|
|
| T |
20544173 |
ttaatttggcaattaaacaaataggtaacatagtaaaagaatccctcgacgtaacctaccagagcaatgaaagtaaaattacaatacaatgtacttgaca |
20544272 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctc |
285 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||| |
|
|
| T |
20544273 |
tgcaagctaatcaaataacaacat-aatagaaaataaaagaaagtcttccatacgccaatataaatagctc |
20544342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 13562218 - 13561944
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||| |||| ||||| | ||||| ||||||| ||||||| || ||||||||| ||| |
|
|
| T |
13562218 |
atagcatgcataccatttgtccatatagaaatgttcaattttttgaaataaaaagagtgttccatcaaacacgtagaaacaccccccaaaatgtcatggt |
13562119 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| ||| ||||||| || | | | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13562118 |
tgaatttggtaattaaacaaataggtaacataataaaagaatccctcgacgtcacacaacggagcaatgagagtaaaattccaatacaaggtacttgaca |
13562019 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaat-taaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||| ||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
13562018 |
tgcaagccaatcaaataacaacgtaaatataaaataaaaaaaaagtcttccaaacaccaatataaatagctcctt |
13561944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 19079554 - 19079819
Alignment:
| Q |
26 |
catatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgata--catcacacacgtataaacacctcctaaaatgtcacggttgaatc |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| | ||||||| |||||||||||| | |||||| |
|
|
| T |
19079554 |
cataccatttgtccaaatagaaatgttcaatttttcgaaataaaaagagtgatatccatcaaacacgcagaaacaccacctaaaatgtcatgtttgaata |
19079653 |
T |
|
| Q |
124 |
tataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgtaag |
220 |
Q |
| |
|
| ||||| ||||||| |||| ||||||||| ||| |||||| |||| ||||| ||| |||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
19079654 |
tgacaatta-acaaatatgtaatatagtaaaagaatccttcgacgctacccaccagagcaatgagagtaaaattacaatagaaggtacttgacatgcaag |
19079752 |
T |
|
| Q |
221 |
ccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||||||| |
|
|
| T |
19079753 |
ccaatcaaataacaacataaatagaaaa-taaagaaagtctttcaaacgccaatattaatagctcctt |
19079819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 19127442 - 19127707
Alignment:
| Q |
26 |
catatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgata--catcacacacgtataaacacctcctaaaatgtcacggttgaatc |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||| | ||||||| |||||||||||| | |||||| |
|
|
| T |
19127442 |
cataccatttgtccaaatagaaatgttcaatttttcgaaataaaaagagtgatatccatcaaacacgcagaaacaccacctaaaatgtcatgtttgaata |
19127541 |
T |
|
| Q |
124 |
tataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgtaag |
220 |
Q |
| |
|
| ||||| ||||||| |||| ||||||||| ||| |||||| |||| ||||| ||| |||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
19127542 |
tgacaatta-acaaatatgtaatatagtaaaagaatccttcgacgctacccaccagagcaatgagagtaaaattacaatagaaggtacttgacatgcaag |
19127640 |
T |
|
| Q |
221 |
ccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||||||| |
|
|
| T |
19127641 |
ccaatcaaataacaacataaatagaaaa-taaagaaagtctttcaaacgccaatattaatagctcctt |
19127707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 20498993 - 20499261
Alignment:
| Q |
22 |
catgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggttgaa |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||| ||||||| || | |||||| ||||| | |
|
|
| T |
20498993 |
catgcataccatttgtccaaatagaaatgttcaatttttaaaaataaaaagagtgatccatcaaacacgtagaaacacccccacatatgtcatggttgga |
20499092 |
T |
|
| Q |
122 |
tctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgta |
218 |
Q |
| |
|
| | ||||| ||||||||||||||||||| || ||| ||||| | ||| ||||| ||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
20499093 |
tttggcaattaaacaaataggtaacatagtacaagaatcc-tcgacatcacccaccagaacaataagagtaaaattacaatccaaggtacttgacatgta |
20499191 |
T |
|
| Q |
219 |
agccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
| || ||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
20499192 |
aaccgatcaaataacaacatgaatagaaaataaaagaaagtcttcaaaacaccaatataaatagctcctt |
20499261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 13525347 - 13525077
Alignment:
| Q |
21 |
gcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgata--catcacacacgtataaacacctcctaaaatgtcacggtt |
118 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||| |||| |||| |||||||| ||||| ||||| | ||||||| |||||||||||| | || |
|
|
| T |
13525347 |
gcatacataccatttgtccaaatagaaatgttcggttttttgaaataaaaagagtgatatccatcaaacacgcagaaacaccacctaaaatgtcatgttt |
13525248 |
T |
|
| Q |
119 |
gaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacat |
215 |
Q |
| |
|
|||| | ||||| ||||||| |||||| ||||||| ||| |||||| |||| ||||| ||| |||||||||||| ||||| ||||||||||| || |
|
|
| T |
13525247 |
gaatatgacaatta-acaaatatgtaacaaagtaaaagaatccttcgacgctacccaccagagcaatgagagtaaaattacaatagaaggtacttgatat |
13525149 |
T |
|
| Q |
216 |
gtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| |||||||| |||| | ||| ||||||||||||||||||| |
|
|
| T |
13525148 |
gcaagccaatcaaataacagcataaatagaaaa-taaagaaagtctttcaaacgccaatataaatagctcctt |
13525077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 13479344 - 13479069
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||| | | ||||| ||| |||| ||||||| ||||| ||| ||| ||||||| |||||||||||| ||| |
|
|
| T |
13479344 |
atagcatgcataccatttgtccaactacaaatgtacgacttttcaaaataaaaagagtgatccatcaaacatgtagaaacacc-cctaaaatgtcatggt |
13479246 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaa---catagtaa---aatccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttg |
211 |
Q |
| |
|
||||| | ||||| |||||||||||| |||||||| ||||| ||||||| |||||||| ||| |||| ||||||| ||||| || || ||| |
|
|
| T |
13479245 |
tgaatttgacaattaaacaaataggtaataacatagtaagagaatccctcgacgtaacctaccacaacaatgagaataaaattacaataaaatgtcctta |
13479146 |
T |
|
| Q |
212 |
acatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
13479145 |
acatgcaagccaatcaaataacaacatggatagaaaataaaagaaagtcttccaaacaccaatataaatagctcctt |
13479069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 13695349 - 13695089
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| ||| |||| ||||||| ||||| ||||||| |||||| | | |||| | || |
|
|
| T |
13695349 |
atagcatgcatgccatttgtccaaagagaaatgttcaatttttcaaaataaaaagagtgatccatcaaacacgtagaaacactgctttaaatttgac--- |
13695253 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13695252 |
----------aattaaacaaataggtaacatagtaaaagaatctctcgacgccacctaacagagcaatgagagtaaaattacaatacaaggtacttgaca |
13695163 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||| ||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
13695162 |
tgcaagccaatcaaataacaacataaatagaaaataaaacaaagtcttccaaacgccaatataaatagctcctt |
13695089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 13446437 - 13446169
Alignment:
| Q |
21 |
gcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggttga |
120 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||||||||| ||| |||| ||||||| |||| ||| | | ||||||| |||||||| ||| | |||| |
|
|
| T |
13446437 |
gcatacataccatttatccaaatagaaatgttcaatttttcaaaataaaaagagtgatcgatcaaacatgcagaaacaccacctaaaatttcatgtttga |
13446338 |
T |
|
| Q |
121 |
atctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgacatgt |
217 |
Q |
| |
|
|| | ||||| ||||||| ||| |||||||||| ||| | | | ||| ||||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
13446337 |
atatgacaatta-acaaatatgtatcatagtaaaagactcccttggcaccacccaccagagcaatgagagtaaaattacaatacaaggtacttgacatac |
13446239 |
T |
|
| Q |
218 |
aagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
13446238 |
aagccaatcaaataacaaaataaatagaaaa-taaagaaagtcttccaaacgccaatataaatagctcctt |
13446169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 15890122 - 15890221
Alignment:
| Q |
185 |
gagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagct |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| |
|
|
| T |
15890122 |
gagtaaaattacaatacaaggtacttgacatgcaagccaatcaaataacaacataaatagaaaataaaagaaagtcttccaaacatcaatataaatagct |
15890221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 86 - 288
Target Start/End: Original strand, 20576368 - 20576571
Alignment:
| Q |
86 |
acacgtataaacacctcctaaaatgtcacggttgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaac |
182 |
Q |
| |
|
||||||| ||||||| |||||||||||| | |||||| | ||||| ||||||| |||||| ||||||| ||| |||||| |||| ||||| ||| |
|
|
| T |
20576368 |
acacgtagaaacaccacctaaaatgtcatgtttgaatatgacaatta-acaaatatgtaacacagtaaaagaatccttcgacgctacccaccagagcaat |
20576466 |
T |
|
| Q |
183 |
gagagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatag |
282 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||| |||| | ||| ||||||||||||| |
|
|
| T |
20576467 |
gagagtaaaattacaatagaaggtacttggcatgcaagccaatcaaataacagcataaatagaaaa-taaagaaagtctttcaaacgccaatataaatag |
20576565 |
T |
|
| Q |
283 |
ctcctt |
288 |
Q |
| |
|
|||||| |
|
|
| T |
20576566 |
ctcctt |
20576571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 13617991 - 13617887
Alignment:
| Q |
184 |
agagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagc |
283 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||| |
|
|
| T |
13617991 |
agagtaaaattacaatccaaggtacttgacatgtaaatcaatcaaataacaacatgaatagaaaataaaagaaagtcttcaaaacaccaatataaatagc |
13617892 |
T |
|
| Q |
284 |
tcctt |
288 |
Q |
| |
|
||||| |
|
|
| T |
13617891 |
tcctt |
13617887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13624398 - 13624346
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaa |
70 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
13624398 |
atagcatgcataccatttgtccaaatagaaatgttcaatttttagaaataaaa |
13624346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 20449964 - 20450013
Alignment:
| Q |
239 |
aaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
20449964 |
aaatagaaattaaaagaaagtcttccaaacaccaatataaattgctcctt |
20450013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 20535729 - 20535778
Alignment:
| Q |
239 |
aaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
||||||||| | ||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
20535729 |
aaatagaaattaaaagaaagtcttccaaacaccaatataaattgctcctt |
20535778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0355 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0355
Description:
Target: scaffold0355; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 12772 - 12501
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||||||| |||| |||| | ||||| ||||||| ||||||| || ||||||||| || |
|
|
| T |
12772 |
atagcatgcataccatttgtccatataaaaatgttcaatttttcgaaataaaa--agtgttccatcaaacacgtagaaacaccccccaaaatgtcatagt |
12675 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| ||| ||||||| ||| | | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
12674 |
tgaatttggtaattaaacaaataggtaacataataaaagaatccttcgacgtcacccaacgaagcaatgagagtaaaattccaatacaaggtacttgaca |
12575 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
12574 |
cgcaagccaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacacgaatataaatagctcctt |
12501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0355; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 15112 - 14841
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||||||| |||| |||| | ||||| ||||||| ||||||| || ||||||||| || |
|
|
| T |
15112 |
atagcatgcataccatttgtccatataaaaatgttcaatttttcgaaataaaa--agtgttccatcaaacacgtagaaacaccccccaaaatgtcatagt |
15015 |
T |
|
| Q |
118 |
tgaatctataaattatacaaataggtaacatagtaaaa---tccatcgacgttacctaccagttcaacgagagtaaaatttcaatacaaggtacttgaca |
214 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||||| ||| ||||||| ||| | | ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
15014 |
tgaatttggtaattaaacaaataggtaacataataaaagaatccttcgacgtcacccaacgaagcaatgagagtaaaattccaatacaaggtacttgaca |
14915 |
T |
|
| Q |
215 |
tgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatagctcctt |
288 |
Q |
| |
|
| ||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
14914 |
cgcaagccaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacacgaatataaatagctcctt |
14841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 64422 - 64317
Alignment:
| Q |
183 |
gagagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatag |
282 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| ||||| ||||||||||| |
|
|
| T |
64422 |
gagagtaaaattccaatacaaggtacttgacatgcaagccaatcaaataacaacgtaaatataaaataaaagaaagtcttccaaacacgaatataaatag |
64323 |
T |
|
| Q |
283 |
ctcctt |
288 |
Q |
| |
|
|||||| |
|
|
| T |
64322 |
ctcctt |
64317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 3783 - 3675
Alignment:
| Q |
183 |
gagagtaaaatttcaatacaaggtacttgacatgtaagccaatcaaataacaacataaatagaaaattaaagaaattcttcccaacaccaatataaatag |
282 |
Q |
| |
|
|||| ||||||| ||| ||||||| ||||||||| |||||||||||||| |||||||||| |||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
3783 |
gagaataaaattacaacacaaggtccttgacatgcaagccaatcaaatagcaacataaattgaaaataaaagaaagtcttccaaacactgatataaatag |
3684 |
T |
|
| Q |
283 |
ctcctttgc |
291 |
Q |
| |
|
||||||||| |
|
|
| T |
3683 |
ctcctttgc |
3675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 3925 - 3821
Alignment:
| Q |
18 |
atagcatgcatatcatttgtccaaatagaaatgttcaatttttcgaaacaaaatgagtgatacatcacacacgtataaacacctcctaaaatgtcacggt |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||| | ||| |||| ||||||| ||||| ||| ||| ||||||| |||||||||||| || |
|
|
| T |
3925 |
atagcatgcataccatttgttcaaatagaaatgttcaattttccaaaataaaaagagtgatccatcaaacatgtagaaacaccccctaaaatgtcatagt |
3826 |
T |
|
| Q |
118 |
tgaat |
122 |
Q |
| |
|
||||| |
|
|
| T |
3825 |
tgaat |
3821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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