View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_10 (Length: 442)
Name: NF1153_high_10
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 38237530 - 38237926
Alignment:
| Q |
30 |
aatatcaacgtgggatttggattataccaattgaaatggaaatgtttgaacagtcaatccatctccaacacaacagcaccgcaaatccgcacccaccact |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237530 |
aatatcaacgtgggatttggattataccaattgaaatggaaatgtttgaacagtcaatccatctccaacacaacagcaccgcaaatccgcacccaccact |
38237629 |
T |
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| Q |
130 |
tccagttgagagagacagagttcccatttgaatatgctatttgtacctccattttcaaactcatacagttggtagcatataatatataacaggaaaattt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38237630 |
tccagttgagagagacagagttcccatttgaatatgctatttgtacctccattttcaaactcatacagttggtagc-----atatataacaggaaaattt |
38237724 |
T |
|
| Q |
230 |
taatttcgatttcgcgtaccaatcaattctcgactagaaccttctttctctgtagaataaaataaaaaacacatcaaccccttaattaatttcgcacgnn |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237725 |
taatttcgatttcgcgtaccaatcaattctcgactagaaccttctttctctgtagaataaaataaaaaacacatcaaccccttaattaatttcgcacgaa |
38237824 |
T |
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| Q |
330 |
nnnnncaaaatctttctttaaattctctcatggccatgtcagttgcttcttctatttgcaccctccttcccttctctaaaccccacaactccgtacctct |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237825 |
aaaaacaaaatctttctttaaattctctcatggccatgtcagttgcttcttctatttgcaccctccttcccttctctaaaccccacaactccgtacctct |
38237924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 16362902 - 16362851
Alignment:
| Q |
53 |
ataccaattgaaatggaaatgtttgaacagtcaatccatctccaacacaaca |
104 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16362902 |
atacaaattgaaatggaaatgtttgaacattcaatccatctccaacacaaca |
16362851 |
T |
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