View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_11 (Length: 420)
Name: NF1153_high_11
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 416
Target Start/End: Complemental strand, 12699320 - 12698936
Alignment:
| Q |
30 |
tgatcaactaaaagaacaagtatatgcacttgtatccgggacaaggaaggaacttttgtgttggcaaaaactattcccatatctctgaaatgtcatgtac |
129 |
Q |
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| T |
12699320 |
tgatcaactaaaagaacaagtatatgtacttgtatccgtgacgaggaaggaacttttgtgttggcaaaaactattcccatatctctgaaatgtcatgtac |
12699221 |
T |
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| Q |
130 |
ccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtccttcaacaacgtggatttcacatccgattccaaagttactataga |
229 |
Q |
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| T |
12699220 |
ccatgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtccttcaacaacgtggatttcacatctgattccaaagttactataga |
12699121 |
T |
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| Q |
230 |
tgctttccatcaagctcaggttgatgttacgaagatagtcaaattagatccgtgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagt |
329 |
Q |
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| T |
12699120 |
tgctttccatcagg--caggttgatgttacggagatagtcaaattagatccgtgtgtcgacatttgttcacttcacaatttacaaactccaagggcgagt |
12699023 |
T |
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| Q |
330 |
tctatagacgacaaacaaatgaggtagctcccattctggtagggttgccacatcattagctagttccactacttagtataatctacc |
416 |
Q |
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| T |
12699022 |
tctatagacgacaaacaaatgaggtagctcacattctggtagggttgccacatcattagctagttccactacttattataatgtacc |
12698936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 359
Target Start/End: Complemental strand, 30449751 - 30449524
Alignment:
| Q |
132 |
atgggggaagcgttgacgttatattatgcaatgcaatggctgagcgacatgtccttcaacaacgtggatttcacatccgattccaaagttactatagatg |
231 |
Q |
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| T |
30449751 |
atgggggatgccttggtgttatactatgctttggaatgcctaagtgacatgtccttcgataatgtggacttcacatctaattccaaagttattatagatg |
30449652 |
T |
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| Q |
232 |
ctttccatcaagctcaggttgatgttacgaaga-tagtcaaattagatccgtgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagtt |
330 |
Q |
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| T |
30449651 |
ctttcaatcaggaacgggttga-gttacggagactggtcacataatctctgtgtgtcgacgtttgtttacatcacacttcacaaactcgaaggttgagtt |
30449553 |
T |
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| Q |
331 |
ctatagacgacaaacaaatgaggtagctc |
359 |
Q |
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| T |
30449552 |
taatatgcaacaagcaaatgaggtagctc |
30449524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 8274741 - 8274774
Alignment:
| Q |
371 |
gggttgccacatcattagctagttccactactta |
404 |
Q |
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| T |
8274741 |
gggttgccacattattagctagttccactactta |
8274774 |
T |
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