View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_14 (Length: 388)
Name: NF1153_high_14
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 27063002 - 27062809
Alignment:
| Q |
89 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
188 |
Q |
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| T |
27063002 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
27062903 |
T |
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| Q |
189 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaat |
282 |
Q |
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| T |
27062902 |
gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaaat |
27062809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 287
Target Start/End: Complemental strand, 27070075 - 27069877
Alignment:
| Q |
89 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
188 |
Q |
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| T |
27070075 |
aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt |
27069976 |
T |
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| Q |
189 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaa |
287 |
Q |
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| T |
27069975 |
gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaa |
27069877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 290
Target Start/End: Complemental strand, 27086131 - 27085930
Alignment:
| Q |
89 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
188 |
Q |
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| T |
27086131 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27086032 |
T |
|
| Q |
189 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat |
288 |
Q |
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| T |
27086031 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat |
27085932 |
T |
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| Q |
289 |
at |
290 |
Q |
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|| |
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| T |
27085931 |
at |
27085930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 287
Target Start/End: Complemental strand, 27041653 - 27041455
Alignment:
| Q |
89 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
188 |
Q |
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|||||||||||||||||||||| |||||| || ||||| ||| | |||| ||||||||||| ||||||||| ||||||||||| || ||||||||||||| |
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| T |
27041653 |
aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27041554 |
T |
|
| Q |
189 |
gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaa |
287 |
Q |
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| T |
27041553 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaa |
27041455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 27098796 - 27098596
Alignment:
| Q |
90 |
acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg |
189 |
Q |
| |
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|||||||||||||||||| | | ||||| |||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| || |
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| T |
27098796 |
acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27098697 |
T |
|
| Q |
190 |
aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaata |
289 |
Q |
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||||||| || ||| | |||| ||||| |||||||||| | || || |||| ||||||||| ||||||||||| |||||||| |||| || ||||| |
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| T |
27098696 |
aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata |
27098597 |
T |
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| Q |
290 |
t |
290 |
Q |
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| T |
27098596 |
t |
27098596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 280
Target Start/End: Complemental strand, 27105795 - 27105605
Alignment:
| Q |
90 |
acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg |
189 |
Q |
| |
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|||||||||||||||||| | | ||||| ||||||||| ||||||||||||| || |||| ||| ||| |||||||||||||||||||| ||| || |
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| T |
27105795 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27105696 |
T |
|
| Q |
190 |
aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaa |
280 |
Q |
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|||||| || ||| | |||| ||| | |||||||||| || ||||| |||| | |||||| |||||||||||||||||||| |||| |
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| T |
27105695 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa |
27105605 |
T |
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