View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_high_15 (Length: 387)

Name: NF1153_high_15
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_high_15
NF1153_high_15
[»] chr6 (2 HSPs)
chr6 (7-289)||(4386853-4387118)
chr6 (335-385)||(4387160-4387210)
[»] chr4 (4 HSPs)
chr4 (15-61)||(3786298-3786344)
chr4 (18-58)||(33090201-33090241)
chr4 (15-58)||(34113118-34113161)
chr4 (15-58)||(38811000-38811043)
[»] chr7 (2 HSPs)
chr7 (15-58)||(26639648-26639691)
chr7 (15-58)||(22328185-22328229)
[»] chr3 (2 HSPs)
chr3 (15-58)||(1683804-1683847)
chr3 (17-55)||(5270705-5270743)
[»] chr1 (3 HSPs)
chr1 (15-58)||(41136144-41136187)
chr1 (18-58)||(12318318-12318358)
chr1 (15-58)||(22079633-22079676)
[»] chr8 (3 HSPs)
chr8 (15-57)||(15691121-15691163)
chr8 (17-58)||(10240445-10240486)
chr8 (17-53)||(20684851-20684887)
[»] chr5 (2 HSPs)
chr5 (15-50)||(317096-317131)
chr5 (15-58)||(4160920-4160963)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 4386853 - 4387118
Alignment:
Q  7 tagattattctaaatttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggacaca 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4386853 tagattaatctaaatttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggaaaca 4386952  T
Q  107 aatttacttaaacagagagaaacctatgggataagagaagcataagattaaacaagtgattagaggtttaaaccttatcatttatttatgatagccaagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 ||||||||| | ||| |||||||||||||||||||||||    
T  4386953 aatttacttaaacagagagaaacctatgggataagagaagcata-----------------agaggtttacatcttttcatttatttatgatagccaagg 4387035  T
Q  207 tatgaaacaaacatatttgaaaggaaacaacaacaaattctccaacgaagtgttaatcactgctcaaggcatacatcaaacct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4387036 tatgaaacaaacatatttgaaaggaaacaacaacaaattctccaacgaagtgttaatcaccgctcaaggcatacatcaaacct 4387118  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 4387160 - 4387210
Alignment:
Q  335 caactattttcataccatattttctacctcattttttacccattaaatgaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4387160 caactattttcataccatattttctacctcattttttacccattaaatgaa 4387210  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 3786298 - 3786344
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaaaaa 61  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  3786298 tctaaatttcattgatgtgagatatggagttaccgaattcacaaaaa 3786344  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 33090201 - 33090241
Alignment:
Q  18 aaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  33090201 aaatttcattgatgtgagatttggagttaccgaattcacaa 33090241  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 34113118 - 34113161
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||||||||||||| ||||| || ||||||||||||||||||    
T  34113118 tctaaatttcattgatatgagaattagagttaccaaattcacaa 34113161  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 38811043 - 38811000
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||||||||||| | ||||||||| |||||||||||||||||    
T  38811043 tctaaatttcattggtttgagatttgaagttaccaaattcacaa 38811000  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 26639648 - 26639691
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  26639648 tctaaattttattgatgtgagatttggagttaccgaattcacaa 26639691  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 22328229 - 22328185
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagtt-accaaattcacaa 58  Q
    |||||||||||||||||||||||||||| || ||| |||||||||    
T  22328229 tctaaatttcattgatgtgagatttggaattgaccgaattcacaa 22328185  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 1683804 - 1683847
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  1683804 tctaaatttcattgatgtgagatttagagttaccgaattcacaa 1683847  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 5270705 - 5270743
Alignment:
Q  17 taaatttcattgatgtgagatttggagttaccaaattca 55  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  5270705 taaatttcattgatgtgagattttgagttaccgaattca 5270743  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 41136144 - 41136187
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  41136144 tctaaatttcattgatgtgagatttggagttaccgaatttacaa 41136187  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 12318358 - 12318318
Alignment:
Q  18 aaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  12318358 aaatttcattgatgtgagatttggagctaccgaattcacaa 12318318  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 22079633 - 22079676
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  22079633 tctaaatttcattgatatgagatttggagtttccgaattcacaa 22079676  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 15691121 - 15691163
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcaca 57  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  15691121 tctaaatttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 10240445 - 10240486
Alignment:
Q  17 taaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  10240445 taaattacattgatgtgaaatttggagttaccgaattcacaa 10240486  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 20684887 - 20684851
Alignment:
Q  17 taaatttcattgatgtgagatttggagttaccaaatt 53  Q
    |||| |||||||||||||||||| |||||||||||||    
T  20684887 taaacttcattgatgtgagattttgagttaccaaatt 20684851  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 317096 - 317131
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaa 50  Q
    ||||||||||||||||||||||||||||||| ||||    
T  317096 tctaaatttcattgatgtgagatttggagtttccaa 317131  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 4160920 - 4160963
Alignment:
Q  15 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 58  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||    
T  4160920 tctaaattatattgatgtgagatttggagttaccaaatttacaa 4160963  T

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