View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_3 (Length: 549)
Name: NF1153_high_3
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 30 - 298
Target Start/End: Original strand, 34139489 - 34139757
Alignment:
| Q |
30 |
gcatcattactccaaacctgtaacaataaactcaagtctctcgttaaatcattttggacatcccaatgcactctatgaagtcttgtctttgtaaaccgac |
129 |
Q |
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| T |
34139489 |
gcatcattactccaaacctgtaacaataaactcaagtctctcgttaaatcattttggacatcccaatgcactctatgaagtcttgtctttgtaaaccgac |
34139588 |
T |
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| Q |
130 |
aaacatttttcaggatttaaatcggcgaagtcaagtggagagcaattttacgatttaaatatgaccttcgaatcataaggcaacggccttagcgttgtgc |
229 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34139589 |
aaacatttttcaggatttaaatccgcgaagtcaagtggagagcaattttacgatttaaatatgaccttcgaatcataaggcaacggccttagcgttgcgc |
34139688 |
T |
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| Q |
230 |
tatggctatgtaagttttgtgtacctcttgatgtggtcattcattctcaaattatcattcaaaattcta |
298 |
Q |
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| T |
34139689 |
tatggctatgtaagttttgcgtacctcttgatgtggtgattcattctcaaattatcattcaaaattcta |
34139757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 324 - 538
Target Start/End: Original strand, 34139785 - 34139999
Alignment:
| Q |
324 |
atcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgattaaaacaaacacagtataaaattatgtcaaaagtacctg |
423 |
Q |
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| T |
34139785 |
atcaataacttctatcaagaatagtaatactaattaaagttaagcaatccataaaagtgactaaaacaaacacagtataaaattatgtcaaaagtacctg |
34139884 |
T |
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| Q |
424 |
aataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagaccttcaacctca |
523 |
Q |
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| T |
34139885 |
aataataccgccaatgttgataatatacggatctcgggtaggttttacaagaacccgttgttgatctgttttacgcttcacttcaagaccttcaacctca |
34139984 |
T |
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| Q |
524 |
tttagggtaagaata |
538 |
Q |
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| T |
34139985 |
tttagggtaagaata |
34139999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 414 - 538
Target Start/End: Original strand, 34131026 - 34131150
Alignment:
| Q |
414 |
aaagtacctgaataataccgtcaatgttgataatgtacggatctcgggtaggttttacaaaaacccattgttgatctgatttacgcttcacttcaagacc |
513 |
Q |
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| T |
34131026 |
aaagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcc |
34131125 |
T |
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| Q |
514 |
ttcaacctcatttagggtaagaata |
538 |
Q |
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| T |
34131126 |
tccaacctcatcttgggcaagaata |
34131150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 34136537 - 34136582
Alignment:
| Q |
30 |
gcatcattactccaaacctgtaacaataaactcaagtctctcgtta |
75 |
Q |
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| T |
34136537 |
gcatcattactccaaacctgcaacaataaacccaagtctctcgtta |
34136582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 538
Target Start/End: Original strand, 34142571 - 34142645
Alignment:
| Q |
464 |
ggttttacaaaaacccattgttgatctgatttacgcttcacttcaagaccttcaacctcatttagggtaagaata |
538 |
Q |
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||||| |||| |||||| |||||||||| ||| |||||||||||||| ||| ||||||||| | ||| ||||||| |
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| T |
34142571 |
ggtttcacaagaacccactgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaata |
34142645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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