View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_30 (Length: 313)
Name: NF1153_high_30
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_30 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 32915251 - 32915419
Alignment:
| Q |
1 |
tattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915251 |
tattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcct |
32915350 |
T |
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| Q |
101 |
cgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc |
169 |
Q |
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| T |
32915351 |
cgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc |
32915419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 32916032 - 32916135
Alignment:
| Q |
181 |
aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg |
280 |
Q |
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||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32916032 |
aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg |
32916131 |
T |
|
| Q |
281 |
cttg |
284 |
Q |
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|||| |
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| T |
32916132 |
cttg |
32916135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
| Q |
56 |
atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
145 |
Q |
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| T |
24945456 |
atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa |
24945367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 9359347 - 9359486
Alignment:
| Q |
6 |
agcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgctt |
105 |
Q |
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|||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||||||||| |||| |
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| T |
9359347 |
agcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagctt |
9359446 |
T |
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| Q |
106 |
gccaaatagcccaaatagttgcatgccaaatgatccacaa |
145 |
Q |
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| T |
9359447 |
gccaaatagcccaaatagttgcatgccaaataatccacaa |
9359486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2308287 - 2308149
Alignment:
| Q |
13 |
acaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaat |
112 |
Q |
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| T |
2308287 |
acaaactccacctccatgaatttaccacaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaat |
2308188 |
T |
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| Q |
113 |
agcccaaatagttgcatgccaaatgatccacaaaccttt |
151 |
Q |
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| T |
2308187 |
agcccatatagttgcatgccaaatgatccacaaaccttt |
2308149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 520131 - 520215
Alignment:
| Q |
57 |
tcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc |
141 |
Q |
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| T |
520131 |
tcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc |
520215 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
| Q |
54 |
agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct |
149 |
Q |
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| T |
51091205 |
agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct |
51091110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 41195215 - 41195261
Alignment:
| Q |
99 |
ctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa |
145 |
Q |
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| T |
41195215 |
ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa |
41195261 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 43805470 - 43805405
Alignment:
| Q |
86 |
aatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt |
151 |
Q |
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| T |
43805470 |
aatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataatccataaaccttt |
43805405 |
T |
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