View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_33 (Length: 302)
Name: NF1153_high_33
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 30542229 - 30542332
Alignment:
| Q |
188 |
gtactactaactcttcttgaccaaacacaaattaaaatggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcctattat |
287 |
Q |
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| T |
30542229 |
gtactactaactcttcttgaccaaacacaaattaaaatggtaaccatcacatgattcacatgcttatataccataatacaaacctaaagcttcccattat |
30542328 |
T |
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| Q |
288 |
tcat |
291 |
Q |
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|||| |
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| T |
30542329 |
tcat |
30542332 |
T |
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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 30542093 - 30542183
Alignment:
| Q |
51 |
aaatttgcattagaatcattatatatattgattgacatgcatagggtcgatcaagaaaggccactagcgtagttatatcgtcaactaagac |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542093 |
aaatttgcattagaatcattatatatattgattgacatgcatagggtcgatcaagaaaggccactagcgtagttatatcgtcaactaagac |
30542183 |
T |
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