View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_high_36 (Length: 294)

Name: NF1153_high_36
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_high_36
NF1153_high_36
[»] chr7 (16 HSPs)
chr7 (104-258)||(47637716-47637872)
chr7 (82-257)||(22718464-22718637)
chr7 (183-258)||(35891088-35891163)
chr7 (180-258)||(24436286-24436364)
chr7 (99-239)||(1831900-1832040)
chr7 (182-257)||(47638719-47638794)
chr7 (180-239)||(17763415-17763474)
chr7 (180-239)||(17764619-17764678)
chr7 (180-239)||(48170181-48170240)
chr7 (179-217)||(13772582-13772620)
chr7 (127-239)||(34158083-34158195)
chr7 (101-164)||(42509034-42509097)
chr7 (182-244)||(11058087-11058149)
chr7 (98-163)||(48168845-48168910)
chr7 (183-239)||(1830893-1830949)
chr7 (180-241)||(11056811-11056872)
[»] chr1 (20 HSPs)
chr1 (96-258)||(8930248-8930410)
chr1 (180-258)||(30536445-30536523)
chr1 (102-258)||(38741474-38741631)
chr1 (172-258)||(4487610-4487696)
chr1 (180-239)||(9441646-9441705)
chr1 (180-239)||(9442909-9442968)
chr1 (184-243)||(38742256-38742315)
chr1 (180-239)||(52084745-52084804)
chr1 (180-238)||(13917192-13917250)
chr1 (180-239)||(14625448-14625507)
chr1 (180-239)||(14626698-14626757)
chr1 (117-244)||(37269575-37269703)
chr1 (186-244)||(37268907-37268965)
chr1 (179-215)||(37193555-37193591)
chr1 (180-215)||(5560950-5560985)
chr1 (180-239)||(13916169-13916228)
chr1 (180-239)||(37194410-37194468)
chr1 (173-235)||(47839888-47839950)
chr1 (172-241)||(2258018-2258087)
chr1 (218-258)||(4488417-4488457)
[»] chr5 (20 HSPs)
chr5 (127-258)||(33847639-33847770)
chr5 (183-258)||(33751925-33752000)
chr5 (184-258)||(11438421-11438495)
chr5 (180-258)||(37274824-37274902)
chr5 (180-239)||(15061743-15061802)
chr5 (180-239)||(21775540-21775599)
chr5 (180-239)||(41064223-41064282)
chr5 (180-258)||(4061410-4061488)
chr5 (180-239)||(11956218-11956277)
chr5 (180-239)||(11957568-11957627)
chr5 (180-239)||(15060242-15060301)
chr5 (180-239)||(15616419-15616478)
chr5 (180-239)||(30798498-30798557)
chr5 (180-239)||(41065576-41065635)
chr5 (180-230)||(33750996-33751046)
chr5 (180-239)||(21776826-21776885)
chr5 (180-239)||(30796657-30796716)
chr5 (102-164)||(26888453-26888515)
chr5 (180-226)||(33847189-33847235)
chr5 (180-239)||(15615181-15615240)
[»] scaffold0250 (1 HSPs)
scaffold0250 (180-258)||(11469-11547)
[»] chr4 (16 HSPs)
chr4 (179-258)||(2438329-2438408)
chr4 (172-250)||(9410189-9410267)
chr4 (172-258)||(37420837-37420923)
chr4 (180-258)||(51754099-51754177)
chr4 (180-239)||(29249629-29249688)
chr4 (180-239)||(34741313-34741372)
chr4 (180-258)||(9410078-9410156)
chr4 (180-239)||(29248320-29248379)
chr4 (180-239)||(34739967-34740026)
chr4 (179-257)||(37421803-37421881)
chr4 (127-239)||(12566858-12566971)
chr4 (99-239)||(20962190-20962331)
chr4 (180-239)||(20963619-20963678)
chr4 (180-239)||(46427166-46427225)
chr4 (181-258)||(7535328-7535405)
chr4 (181-258)||(7533669-7533746)
[»] chr3 (18 HSPs)
chr3 (179-258)||(15093614-15093693)
chr3 (180-259)||(38842196-38842275)
chr3 (183-257)||(46596176-46596250)
chr3 (172-239)||(2011880-2011947)
chr3 (180-259)||(27315272-27315351)
chr3 (180-239)||(10615353-10615412)
chr3 (180-239)||(10616691-10616750)
chr3 (180-239)||(28208065-28208124)
chr3 (183-237)||(28207059-28207113)
chr3 (180-258)||(37976047-37976124)
chr3 (180-238)||(46610087-46610145)
chr3 (180-241)||(24528480-24528541)
chr3 (183-239)||(27360492-27360548)
chr3 (179-215)||(43930744-43930780)
chr3 (180-239)||(48288281-48288340)
chr3 (180-241)||(22257252-22257313)
chr3 (181-258)||(24842900-24842977)
chr3 (180-241)||(37977427-37977488)
[»] scaffold0227 (1 HSPs)
scaffold0227 (180-258)||(24838-24916)
[»] scaffold0040 (2 HSPs)
scaffold0040 (180-258)||(64581-64659)
scaffold0040 (180-240)||(65961-66021)
[»] chr2 (15 HSPs)
chr2 (180-239)||(38876941-38877000)
chr2 (180-239)||(1904328-1904387)
chr2 (180-243)||(5969807-5969870)
chr2 (180-239)||(21904003-21904062)
chr2 (180-239)||(38876068-38876127)
chr2 (180-239)||(1903009-1903068)
chr2 (180-239)||(38815013-38815072)
chr2 (180-239)||(38937008-38937067)
chr2 (180-239)||(38937428-38937487)
chr2 (180-238)||(38936022-38936080)
chr2 (180-239)||(44366946-44367005)
chr2 (180-239)||(7577696-7577755)
chr2 (180-239)||(38813654-38813713)
chr2 (183-258)||(42235644-42235719)
chr2 (187-239)||(11101179-11101231)
[»] scaffold0210 (1 HSPs)
scaffold0210 (179-247)||(16696-16764)
[»] chr8 (14 HSPs)
chr8 (180-244)||(21397797-21397861)
chr8 (180-244)||(21792290-21792354)
chr8 (180-239)||(5704450-5704509)
chr8 (180-239)||(27164578-27164637)
chr8 (182-244)||(6105636-6105698)
chr8 (127-239)||(39808672-39808785)
chr8 (180-239)||(27163195-27163254)
chr8 (180-239)||(28574617-28574676)
chr8 (180-239)||(39810006-39810065)
chr8 (105-203)||(39682964-39683064)
chr8 (180-239)||(42349039-42349098)
chr8 (180-208)||(5703131-5703159)
chr8 (180-208)||(28561970-28561998)
chr8 (180-208)||(28567468-28567496)
[»] scaffold0112 (2 HSPs)
scaffold0112 (180-258)||(36140-36218)
scaffold0112 (181-244)||(36914-36977)
[»] chr6 (10 HSPs)
chr6 (121-239)||(24235550-24235669)
chr6 (183-244)||(11425683-11425744)
chr6 (180-239)||(22058198-22058257)
chr6 (180-239)||(24234408-24234467)
chr6 (179-244)||(11424835-11424900)
chr6 (180-239)||(22056561-22056620)
chr6 (179-239)||(6000590-6000650)
chr6 (180-239)||(24914517-24914576)
chr6 (185-239)||(5999793-5999847)
chr6 (180-218)||(33485016-33485054)
[»] scaffold0093 (3 HSPs)
scaffold0093 (180-244)||(8962-9026)
scaffold0093 (183-244)||(2741-2802)
scaffold0093 (183-244)||(7364-7425)
[»] scaffold0176 (1 HSPs)
scaffold0176 (180-239)||(206-265)
[»] scaffold0129 (2 HSPs)
scaffold0129 (180-259)||(30803-30882)
scaffold0129 (180-225)||(37325-37370)
[»] scaffold0933 (1 HSPs)
scaffold0933 (174-243)||(2633-2702)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 47637716 - 47637872
Alignment:
Q  104 ggttaatagtgcattatcctc-tataatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagattctt 201  Q
    |||||||||||| ||| |||| | ||||||| | ||||||||||||| |  |||||||||||        ||||| ||||||||||||||||||||||||    
T  47637716 ggttaatagtgctttaacctcctgtaatataagacacttttgattttacctcctgtaaaatattatttttagattatatccttgtaaaataaagattctt 47637815  T
Q  202 caagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    || |||| ||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  47637816 catgattgccccctgacccctatgactcatcagaatctcttgcatggctctcatgtg 47637872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 22718637 - 22718464
Alignment:
Q  82 gaataatttcgattaaataaagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaatannnnnnna-gattttat 180  Q
    ||||||||| |||||||||||||||||||||||  ||| ||  | |||||   | ||||||||||||| ||||||||||||||       | ||||| ||    
T  22718637 gaataatttagattaaataaagggttaatagtgttttaccccttgtaatag--gacacttttgattttacaccctgtaaaatatttttttaagatttcat 22718540  T
Q  181 ccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgt 257  Q
    ||||||||||||||||||||||| ||||||| | | |||| ||||| |||||| ||||||||||||| |||||||||    
T  22718539 ccttgtaaaataaagattcttcaggattacctcataacccatatgattcatca-aatctcttacatggcgctcatgt 22718464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 35891088 - 35891163
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  35891088 ttgtaaaataaagattcttcaggattgccccctgacccctatgactcagcagaatctcttacgtggcgctgatgtg 35891163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 24436364 - 24436286
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||| |||| |||||    
T  24436364 tccttgtaaaataaagattcctcaggattgccccctgacccatatgactcagcagaatctcttacatggcgctgatgtg 24436286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 1832040 - 1831900
Alignment:
Q  99 taaagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagat 197  Q
    |||||||||||||| || ||| || || ||||||| ||||||||||||||| | ||||||||| |         ||||| ||||||||||||||||||||    
T  1832040 taaagggttaatagggctttaccccctgtaatatagggcacttttgattttcc-ccctgtaaatttttttttttagattctatccttgtaaaataaagat 1831942  T
Q  198 tcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||| |||||| | |||| ||||||| ||||||||    
T  1831941 tcttcaagattgccccctaagccctgtgactcagcagaatct 1831900  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 47638794 - 47638719
Alignment:
Q  182 cttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgt 257  Q
    |||||||||||||||||||||| |||| || ||||| || ||||||||| || |||||||||||||||||| ||||    
T  47638794 cttgtaaaataaagattcttcaggattgcctcctgatccatatgactcaacaaaatctcttacatgacgctgatgt 47638719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 17763415 - 17763474
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  17763415 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 17763474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 17764678 - 17764619
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  17764678 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 17764619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 48170240 - 48170181
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  48170240 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 48170181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 13772620 - 13772582
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctga 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13772620 atccttgtaaaataaagattcttcaagattaccccctga 13772582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 34158083 - 34158195
Alignment:
Q  127 taatatacggcacttttgattttgcaccctgtaaaatannnnnnnagattttatccttgtaaaataaagattcttcaagattaccccctgacccctatga 226  Q
    ||||||| |||||||||| |||||| ||||| |||| |       |||||   |||||||||||| |||||||||||||||| ||||| || |||| |||    
T  34158083 taatatagggcacttttggttttgccccctgnaaaaaaaaaaattagattccgtccttgtaaaatgaagattcttcaagattgcccccagatccctgtga 34158182  T
Q  227 ctcatcagaatct 239  Q
    |||| ||||||||    
T  34158183 ctcagcagaatct 34158195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 42509097 - 42509034
Alignment:
Q  101 aagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaata 164  Q
    ||||||||||||||  ||| ||||| ||||||| |||||||||| |||||| ||||||||||||    
T  42509097 aagggttaatagtgttttaccctctgtaatatagggcacttttggttttgccccctgtaaaata 42509034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 11058149 - 11058087
Alignment:
Q  182 cttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    ||||||||||||| |||||||| |||| |||||| || | ||||||||| |||||||||||||    
T  11058149 cttgtaaaataaaaattcttcatgattgccccctcacacttatgactcagcagaatctcttac 11058087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 48168845 - 48168910
Alignment:
Q  98 ataaagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaat 163  Q
    |||||||||||||||  | ||| ||||| ||||||| |||||||||| |||||| |||||||||||    
T  48168845 ataaagggttaataggtctttaccctctgtaatatagggcacttttggttttgccccctgtaaaat 48168910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 1830893 - 1830949
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||||||||||||||||| | |||||| |||| ||||| | ||||||||    
T  1830893 ttgtaaaataaagattcttcaagattgctccctgagccctgtgacttagcagaatct 1830949  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 11056811 - 11056872
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctct 241  Q
    |||||||||||| ||||||||||| |||| |||||| | |||  ||||||| ||||||||||    
T  11056811 tccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatctct 11056872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 8930410 - 8930248
Alignment:
Q  96 aaataaagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaatannnnnnnagattttatccttgtaaaataaag 195  Q
    ||||||||||||||||| |  ||| || || ||||||| || ||||||| |||||  |||||||||| |       ||||||  ||||||||||||||||    
T  8930410 aaataaagggttaatagagttttaccccctgtaatataaggtacttttggttttgtcccctgtaaaaaaaaaaattagatttcgtccttgtaaaataaag 8930311  T
Q  196 attcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  8930310 attcttcaggattgccccctgacccctatgactcagcagaatctcttacgtggcgctgatgtg 8930248  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 30536445 - 30536523
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| || ||| ||||||||||    
T  30536445 tccttgtaaaataaagattcttcatgattgcctcctgatccctatgactcatcagaatctcatatatggcgctcatgtg 30536523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 38741474 - 38741631
Alignment:
Q  102 agggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagattct 200  Q
    |||||||||| ||  ||| || || ||||||| | |||||||| |||||| ||||||||||||        |||||| ||||||||||||||||||||||    
T  38741474 agggttaataatgttttaacccctgtaatataagacacttttggttttgccccctgtaaaatattttttttagatttcatccttgtaaaataaagattct 38741573  T
Q  201 tcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||  ||| |||||| |||||||||||||| || |||||||||| || |||| |||||    
T  38741574 tcagaattgccccctaacccctatgactcagcaaaatctcttacgtggcgctgatgtg 38741631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 4487610 - 4487696
Alignment:
Q  172 agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||| |||||||||||||||||||||||| |||| |||| | | |||||||||||| || |||||||||| ||||||| |||||    
T  4487610 agattttgtccttgtaaaataaagattcttcaggattgccccataatccctatgactcagcaaaatctcttacgtgacgctaatgtg 4487696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 9441646 - 9441705
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  9441646 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 9441705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 9442968 - 9442909
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  9442968 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 9442909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 38742315 - 38742256
Alignment:
Q  184 tgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctctta 243  Q
    |||||||||| ||||||||| |||| |||| |||||||||||||||| ||||||||||||    
T  38742315 tgtaaaataacgattcttcatgattgccccttgacccctatgactcaacagaatctctta 38742256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 52084804 - 52084745
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| |||||||| || | ||||||| ||||||||    
T  52084804 tccttgtaaaataaagattcttcaagattgccccctgagccatgtgactcagcagaatct 52084745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 13917250 - 13917192
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatc 238  Q
    ||||||||||||||||||||||||||||| || ||||| |||| ||||||| |||||||    
T  13917250 tccttgtaaaataaagattcttcaagattgcctcctgagccctgtgactcagcagaatc 13917192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 14625448 - 14625507
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| ||| |||| |||| ||||||| ||||||||    
T  14625448 tccttgtaaaatgaagattcttcaagattgccctctgagccctgtgactcagcagaatct 14625507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 14626757 - 14626698
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||  ||||||| ||||||||    
T  14626757 tccttgtaaaatgaagattcttcaagattgccccctgagccccgtgactcagcagaatct 14626698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 37269703 - 37269575
Alignment:
Q  117 ttatcctctataatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagattcttcaagattaccccct 215  Q
    |||||| || ||||||| || ||||||||||||||| | |||||||||        ||||||  |||||||| ||||||||||||||| |||| ||||||    
T  37269703 ttatccactgtaatatatggtacttttgattttgcatcatgtaaaatattttttttagatttcgtccttgtacaataaagattcttcaggattgccccct 37269604  T
Q  216 gacccctatgactcatcagaatctcttac 244  Q
    ||| | ||||||| |  ||||||||||||    
T  37269603 gactcttatgacttagtagaatctcttac 37269575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 37268907 - 37268965
Alignment:
Q  186 taaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    ||||||||| |||||||| |||| |||||| |||||||||||||  |||||||||||||    
T  37268907 taaaataaaaattcttcaggattgccccctcacccctatgactctgcagaatctcttac 37268965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 37193555 - 37193591
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccct 215  Q
    |||||||||||||||||||||||||||||| ||||||    
T  37193555 atccttgtaaaataaagattcttcaagattgccccct 37193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 5560950 - 5560985
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccct 215  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5560950 tccttgtaaaataaagattcttcaagattgccccct 5560985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 13916169 - 13916228
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| ||| |||| | || ||||||| || |||||    
T  13916169 tccttgtaaaataaagattcttcaagattgcccactgagcgctgtgactcagcacaatct 13916228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 37194468 - 37194410
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||||||||||||||||||||  ||||||| |||  ||||||| ||||||||    
T  37194468 tccttgtaaaataaagattcttcaagatt-gcccctgagccccgtgactcagcagaatct 37194410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 47839950 - 47839888
Alignment:
Q  173 gattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcaga 235  Q
    |||| |||||||||||||| |||||||||||  | ||  ||||||||| ||||||||||||||    
T  47839950 gattctatccttgtaaaatcaagattcttcagaaataggccctgacccatatgactcatcaga 47839888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 2258087 - 2258018
Alignment:
Q  172 agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctct 241  Q
    ||||| |||||||||||||||||||||||| | ||||  ||| ||  ||| |||||||| ||||||||||    
T  2258087 agattatatccttgtaaaataaagattctttatgattgtcccttgtacccaatgactcagcagaatctct 2258018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 4488457 - 4488417
Alignment:
Q  218 cccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||| ||||||||||||||| ||||| ||||    
T  4488457 cccctatgactcattagaatctcttacatggcgctcgtgtg 4488417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 33847770 - 33847639
Alignment:
Q  127 taatatacggcacttttgattttgcaccctgtaaaatannnnnnnagattttatccttgtaaaataaagattcttcaagattaccccctgacccctatga 226  Q
    ||||||| ||||||||||||||||| |  |||||||||       ||||||  ||||||||||||||| |||||||||||||  | |||||| |||||||    
T  33847770 taatatagggcacttttgattttgctctatgtaaaatatttttttagatttcgtccttgtaaaataaaaattcttcaagattgtctcctgactcctatga 33847671  T
Q  227 ctcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||| |||||| ||||||||||    
T  33847670 ctcatcagaatctcatacatggcgctcatgtg 33847639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 33752000 - 33751925
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||| |||||||| || |||||    
T  33752000 ttgtaaaataaaaattcttcaagattgtcccctgccccctatgactcatcagaatctcatacatgacacttatgtg 33751925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 11438421 - 11438495
Alignment:
Q  184 tgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||| || |||| |||||    
T  11438421 tgtaaaataaagattcttcaggattgtcccctgacccctatgactcagcagaatctcttacgtggcgctgatgtg 11438495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 37274824 - 37274902
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| |||||| || ||||||||||| ||||||||||||| || |||| |||||    
T  37274824 tccttgtaaaataaagattcttcaggattgccccctaactcctatgactcagcagaatctcttacgtggcgctgatgtg 37274902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 15061802 - 15061743
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  15061802 tccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatct 15061743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 21775540 - 21775599
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  21775540 tccttgtaaaatgaagattcttcaagattgccccctgaaccctatgactcagcagaatct 21775599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 41064223 - 41064282
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  41064223 tccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatct 41064282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 4061488 - 4061410
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| ||||  |||||||||| ||||||||| || |||||||||| |||| || |||||    
T  4061488 tccttgtaaaataaagattcttcaggattgtcccctgacccttatgactcagcaaaatctcttacgtgacactgatgtg 4061410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 11956218 - 11956277
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  11956218 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 11956277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 11957627 - 11957568
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| | |||||||||||||| |||||||| |||||||||||| ||||||||    
T  11957627 tccttgtaaaatgacgattcttcaagattgccccctgagccctatgactcagcagaatct 11957568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 15060242 - 15060301
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  15060242 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 15060301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 15616478 - 15616419
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  15616478 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 15616419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 30798557 - 30798498
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  30798557 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 30798498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 41065635 - 41065576
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  41065635 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 41065576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 33750996 - 33751046
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactca 230  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  33750996 tccttgtaaaataaagattcttcaggattgccccctgatccctatgactca 33751046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 21776885 - 21776826
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||| | |||| ||||||| ||||||||    
T  21776885 tccttgtaaaatgaagattcttcaagattgccccctaagccctgtgactcagcagaatct 21776826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 30796657 - 30796716
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| | |||||| |||| ||||||| ||||||||    
T  30796657 tccttgtaaaatgaagattcttcaagattgcaccctgagccctgtgactcagcagaatct 30796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 26888515 - 26888453
Alignment:
Q  102 agggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaata 164  Q
    |||||||||||||  ||| ||||||||||||| | |||||||| |||||| ||||||||||||    
T  26888515 agggttaatagtgttttaccctctataatataggtcacttttggttttgccccctgtaaaata 26888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 33847189 - 33847235
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatga 226  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||    
T  33847189 tccttgtaaaataaagattcttcaggattgccccctgatccctatga 33847235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 15615181 - 15615240
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||| | |||||||||||||||| |||||||| || | ||||||| ||||||||    
T  15615181 tccttgtaaattgaagattcttcaagattgccccctgagccatgtgactcagcagaatct 15615240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 11547 - 11469
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  11547 tccttgtaaaataaagattcttcaggattgccccctgacccctatgactcagcagaatctcttacgtggcgctgatgtg 11469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 2438329 - 2438408
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||| || |||| |||||    
T  2438329 atccttgtaaaataaagattcttcaggattgctccctgacccctatgactcagcagaatctcttacgtggcgctgatgtg 2438408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 9410267 - 9410189
Alignment:
Q  172 agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacg 250  Q
    |||||| |||||||||||||||||||||||||  ||| ||||||| |||||||||||||  |||||||||||| |||||    
T  9410267 agatttcatccttgtaaaataaagattcttcagtattgccccctgtcccctatgactcagtagaatctcttacgtgacg 9410189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 37420837 - 37420923
Alignment:
Q  172 agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||||||||||||||||   || |||||| |  |||||||||||||||||||||||| ||| |||| |||||    
T  37420837 agattttatccttgtaaaataaagattcttcagacttgccccctaattcctatgactcatcagaatctcttatatggcgcttatgtg 37420923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 51754177 - 51754099
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||||| || |||||||||| ||||||| |||||    
T  51754177 tccttgtaaaataaagattcttcaggattgccccatgatccctatgactcaacaaaatctcttacgtgacgctgatgtg 51754099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 29249688 - 29249629
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  29249688 tccttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatct 29249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 34741372 - 34741313
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  34741372 tccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatct 34741313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 9410078 - 9410156
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||||||||||| |||||||| |||| || |||| |||||    
T  9410078 tccttgtaaaataaatattcttcagtattgccccctgacccctatgactcagcagaatcttttacgtggcgctgatgtg 9410156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 29248320 - 29248379
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  29248320 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 29248379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 34739967 - 34740026
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  34739967 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 34740026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 37421881 - 37421803
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgt 257  Q
    |||||||||||||||||||| |||| |||| ||| | ||||||||| ||||| ||||||||||||| || |||| ||||    
T  37421881 atccttgtaaaataaagattattcaggattgccctcagacccctataactcagcagaatctcttacgtggcgctgatgt 37421803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 12566971 - 12566858
Alignment:
Q  127 taatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatg 225  Q
    ||||||| |||||||||| |||||| |||||||||||         ||||| | |||||||||||| |||||||||||||||| |||||||| |||| ||    
T  12566971 taatatagggcacttttggttttgccccctgtaaaatttgtttcttagattctgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtg 12566872  T
Q  226 actcatcagaatct 239  Q
    ||||| | ||||||    
T  12566871 actcagctgaatct 12566858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 20962190 - 20962331
Alignment:
Q  99 taaagggttaatagtgcattatcctctataatatacggcacttttgattttgcaccctgtaaaa-tannnnnnnagattttatccttgtaaaataaagat 197  Q
    ||||||||||||||  | ||| || || ||||||| |||||||||| |||||| |||||||||| |        |||||   |||||||||||| |||||    
T  20962190 taaagggttaatagatctttaccccctgtaatatatggcacttttggttttgccccctgtaaaaatttttttttagattccgtccttgtaaaatgaagat 20962289  T
Q  198 tcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||| || ||||| |||| ||||||| ||||||||    
T  20962290 tcttcaagattgcctcctgagccctgtgactcagcagaatct 20962331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 20963678 - 20963619
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| ||||||||||||||||  ||||||| |||| ||||||| ||||||||    
T  20963678 tccttgtaaaatgaagattcttcaagattgtcccctgagccctgtgactcagcagaatct 20963619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 46427225 - 46427166
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||| |||||||||||||| |||||||| |||||||| |||| ||||||| ||||||||    
T  46427225 tccttataaaataaagattcatcaagattgccccctgagccctgtgactcagcagaatct 46427166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 7535405 - 7535328
Alignment:
Q  181 ccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||||||| ||| || |||| |||||    
T  7535405 ccttgaaaaatgaagattcttcaggattagcccctcaccccaatgactcagcagaatctcctacgtggcgctgatgtg 7535328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 7533669 - 7533746
Alignment:
Q  181 ccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||| ||||| ||||||||||| ||||  ||||| ||||| |||||||| ||||||||| ||| || |||| |||||    
T  7533669 ccttgaaaaatgaagattcttcaggattggcccctcaccccaatgactcagcagaatctcctacgtggcgctgatgtg 7533746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 15093693 - 15093614
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||| || |||| |||||    
T  15093693 atccttgtaaaataaagattcttcaggattgccccctgacccctatgactcaacagaatctcctacgtggcgctgatgtg 15093614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 38842196 - 38842275
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtga 259  Q
    |||||||||||||||||||||||| || |  || ||||||||||||||||| ||||||||||||| || |||||||||||    
T  38842196 tccttgtaaaataaagattcttcaggaatgtcctctgacccctatgactcagcagaatctcttacgtggcgctcatgtga 38842275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 46596176 - 46596250
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgt 257  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||| || |||| ||||    
T  46596176 ttgtaaaataaagattcttcaggattgccccatgacccctatgactcagcagaatctcttacgtggcgctgatgt 46596250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 2011947 - 2011880
Alignment:
Q  172 agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||| |||||||||||||||||||||||||| ||||  ||||||| |||||||||||| ||||||||    
T  2011947 agattctatccttgtaaaataaagattcttcaggattgtcccctgaaccctatgactcagcagaatct 2011880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 27315272 - 27315351
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtga 259  Q
    ||||||||||||||||||| |||| |||| |||||||| ||| |||||||| ||||||||||||  ||||||| ||||||    
T  27315272 tccttgtaaaataaagatttttcaggattgccccctgatcccaatgactcagcagaatctcttatgtgacgctgatgtga 27315351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 10615353 - 10615412
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  10615353 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 10615412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 10616750 - 10616691
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  10616750 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 10616691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 28208124 - 28208065
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| ||||||| ||||||||    
T  28208124 tccttgtaaaataaagattcttcaagattgccccctgagtcctgtgactcagcagaatct 28208065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 28207059 - 28207113
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaat 237  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||    
T  28207059 ttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaat 28207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 37976047 - 37976124
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||||| || |||| || |  ||||||||||||||| ||||||||||||| || |||| |||||    
T  37976047 tccttgtaaaataaagattctccaggattgcctca-gacccctatgactcagcagaatctcttacgtggcgctgatgtg 37976124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 46610087 - 46610145
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatc 238  Q
    |||||||||||| |||||||||||||||| | |||||| |||| ||||||| |||||||    
T  46610087 tccttgtaaaatgaagattcttcaagattgctccctgagccctgtgactcagcagaatc 46610145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 24528541 - 24528480
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctct 241  Q
    |||| |||||||||| |||||| ||||||  ||||||| |||||||||||| ||||||||||    
T  24528541 tcctcgtaaaataaatattctttaagattgtcccctgagccctatgactcagcagaatctct 24528480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 27360492 - 27360548
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||| ||||  ||||||| |||||||||||| || |||||    
T  27360492 ttgtaaaataaagattcttcaggattctcccctgagccctatgactcagcaaaatct 27360548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 43930780 - 43930744
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccct 215  Q
    |||||||||||||||||||||||||||||| ||||||    
T  43930780 atccttgtaaaataaagattcttcaagattgccccct 43930744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 48288340 - 48288281
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||||||||||||||| |||  || ||||| |||| ||||||| ||||||||    
T  48288340 tccttgtaaaataaagattcttcaggatcgcctcctgagccctgtgactcaacagaatct 48288281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 22257313 - 22257252
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctct 241  Q
    |||||||||||||||||||||||| |||| ||||| || |||| ||| ||| || |||||||    
T  22257313 tccttgtaaaataaagattcttcaggatttccccccgagccctttgagtcaacataatctct 22257252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 24842900 - 24842977
Alignment:
Q  181 ccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||| ||||| ||||||||||| ||||  ||||| ||||| |||||||| ||||||||| ||| || |||| |||||    
T  24842900 ccttgaaaaatgaagattcttcaggattggcccctcaccccaatgactcagcagaatctcctacgtggcgctgatgtg 24842977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 37977488 - 37977427
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctct 241  Q
    |||||||||||| |||| |||||| |||| |||||| | ||| |||||||| ||||||||||    
T  37977488 tccttgtaaaatgaagaatcttcatgattgccccctaagcccaatgactcagcagaatctct 37977427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 24916 - 24838
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||| || |||| |||||    
T  24916 tccttgtaaaataaagattcttcaggattgccccctgacccctatgactcagcaaaatctcttacgtggcgctgatgtg 24838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 64581 - 64659
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||| || |||| |||||    
T  64581 tccttgtaaaataaagattcttcaggattgccccctgacccctgtgactcagcagaatctcttacgtggcgctgatgtg 64659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 66021 - 65961
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctc 240  Q
    |||||||||||| ||||||||||| |||| |||||| | |||  ||||||| |||||||||    
T  66021 tccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatctc 65961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 38877000 - 38876941
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||    
T  38877000 tccttgtaaaataaagattcttcaagattgccccctgagccctatgactcagcagaatct 38876941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 1904387 - 1904328
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  1904387 tccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatct 1904328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 5969807 - 5969870
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctctta 243  Q
    |||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||||||||||    
T  5969807 tccttgtaaaataaagattcttaatgattgtcccctgacccctatgactcagcagaatctctta 5969870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 21904003 - 21904062
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  21904003 tccttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatct 21904062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 38876068 - 38876127
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  38876068 tccttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatct 38876127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 1903009 - 1903068
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  1903009 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 1903068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 38815072 - 38815013
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  38815072 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 38815013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 38937008 - 38937067
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  38937008 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 38937067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 38937487 - 38937428
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  38937487 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 38937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 38936022 - 38936080
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatc 238  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| |||||||    
T  38936022 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatc 38936080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 44366946 - 44367005
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| | || ||||||| ||||||||    
T  44366946 tccttgtaaaatgaagattcttcaagattgccccctgagctctgtgactcagcagaatct 44367005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 7577755 - 7577696
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| ||||||| |||||||| |||||||| || | ||||||| ||||||||    
T  7577755 tccttgtaaaatgaagattcatcaagattgccccctgagccttgtgactcagcagaatct 7577696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 38813654 - 38813713
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| || ||||||||||||| |||||| | |||| ||||||| ||||||||    
T  38813654 tccttgtaaaatgaatattcttcaagattgccccctaagccctgtgactcagcagaatct 38813713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 42235644 - 42235719
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||| |  |||  |||||||||| ||||| |||| |||||||||||| || |||| |||||    
T  42235644 ttgtaaaataaagattctttagaattgacccctgacccttatgattcattagaatctcttacgtggcgctgatgtg 42235719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 11101179 - 11101231
Alignment:
Q  187 aaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||||||||||||| |||||||| |  | ||||||| ||||||||    
T  11101179 aaaataaagattcttcaagattgccccctgagcgttgtgactcagcagaatct 11101231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 16696 - 16764
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatg 247  Q
    |||||||||||||||||||| |||| |||| |||||||||| |||||||||||| ||||||| ||||||    
T  16696 atccttgtaaaataaagattattcaggattgccccctgaccactatgactcatcggaatctcctacatg 16764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 21397861 - 21397797
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||||||||||||| || | |||| |||||||||||||| |||||||||||||    
T  21397861 tccttgtaaaataaagattcttcaaggttgcaccctaacccctatgactcagcagaatctcttac 21397797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 21792354 - 21792290
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||||||||||||| || | |||| |||||||||||||| |||||||||||||    
T  21792354 tccttgtaaaataaagattcttcaaggttgcaccctaacccctatgactcagcagaatctcttac 21792290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 5704509 - 5704450
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  5704509 tccttgtaaaataaagattcttcaagattaccccctgagccctgtgactcagcagtatct 5704450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 27164637 - 27164578
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||    
T  27164637 tccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatct 27164578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 6105636 - 6105698
Alignment:
Q  182 cttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||| || ||||||||||    
T  6105636 cttgtaaaataaagattcttcaggattgccccctgacctctatgactcaacataatctcttac 6105698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 39808672 - 39808785
Alignment:
Q  127 taatatacggcacttttgattttgcaccctgtaaaatannnnnnn-agattttatccttgtaaaataaagattcttcaagattaccccctgacccctatg 225  Q
    ||||||| |||||||||| |||||| |||||||||| |        ||||| | |||||||||||| |||||||||||||||| |||||||| |||| ||    
T  39808672 taatatagggcacttttggttttgccccctgtaaaaaaaaaaatttagattctgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtg 39808771  T
Q  226 actcatcagaatct 239  Q
    ||||| ||||||||    
T  39808772 actcagcagaatct 39808785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 27163195 - 27163254
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  27163195 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 27163254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 28574617 - 28574676
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||| ||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  28574617 tccttttaaaataaagattcttcaagattgccccctgaaccctgtgactcagcagaatct 28574676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 39810065 - 39810006
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  39810065 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 39810006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 39683064 - 39682964
Alignment:
Q  105 gttaatagtgcattatcct-ctataatatacggcacttttgattttgcaccctgtaaaata-nnnnnnnagattttatccttgtaaaataaagattcttc 202  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||||| |||| |||||||        |||||  ||||||||||||||||||||||||    
T  39683064 gttaatagtgctttacccttctataatatagggcacttttgattttgccccctataaaatattttttttagattcgatccttgtaaaataaagattcttc 39682965  T
Q  203 a 203  Q
    |    
T  39682964 a 39682964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 42349039 - 42349098
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| ||||||||||||||||  ||||||| |||| ||||||| ||||||||    
T  42349039 tccttgtaaaatgaagattcttcaagattgtcccctgaaccctgtgactcagcagaatct 42349098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 5703131 - 5703159
Alignment:
Q  180 tccttgtaaaataaagattcttcaagatt 208  Q
    |||||||||||||||||||||||||||||    
T  5703131 tccttgtaaaataaagattcttcaagatt 5703159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 28561998 - 28561970
Alignment:
Q  180 tccttgtaaaataaagattcttcaagatt 208  Q
    |||||||||||||||||||||||||||||    
T  28561998 tccttgtaaaataaagattcttcaagatt 28561970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 28567496 - 28567468
Alignment:
Q  180 tccttgtaaaataaagattcttcaagatt 208  Q
    |||||||||||||||||||||||||||||    
T  28567496 tccttgtaaaataaagattcttcaagatt 28567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 36140 - 36218
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtg 258  Q
    ||||||||||||||||||| |||| |||| |||||| |||||||||||||| |||||||| |||| || |||| |||||    
T  36140 tccttgtaaaataaagatttttcaggattgccccctaacccctatgactcagcagaatcttttacgtggcgctgatgtg 36218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 36977 - 36914
Alignment:
Q  181 ccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    ||||||||||||  ||||||| | |||| |||||| | |||||||||||| |||||||||||||    
T  36977 ccttgtaaaatagtgattctttaggattgccccctaatccctatgactcagcagaatctcttac 36914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 24235669 - 24235550
Alignment:
Q  121 cctctataatatacggcacttttgattttgcaccctgtaaaa-tannnnnnnagattttatccttgtaaaataaagattcttcaagattaccccctgacc 219  Q
    ||||| ||||||| |||||||||| |||||| |||||||||| |        ||||| | |||||||||||| |||||||||||||||| |||||||| |    
T  24235669 cctctgtaatatagggcacttttggttttgccccctgtaaaaatttatttttagattctgtccttgtaaaatgaagattcttcaagattgccccctgagc 24235570  T
Q  220 cctatgactcatcagaatct 239  Q
    ||| ||||||| ||||||||    
T  24235569 cctgtgactcagcagaatct 24235550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 11425744 - 11425683
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    ||||||||||||||||| ||||||||||||||| |||||||| ||| | |||||||||||||    
T  11425744 ttgtaaaataaagattcatcaagattaccccctaacccctatcacttagcagaatctcttac 11425683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 22058257 - 22058198
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||| ||| |||||||||||| ||||||||    
T  22058257 tccttgtaaaatgaagattcttcaagattgccccttgagccctatgactcagcagaatct 22058198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 24234408 - 24234467
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  24234408 tccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatct 24234467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 11424835 - 11424900
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    ||||||||||||||||||||||||| ||||  ||||| || ||||||||||| | |||||||||||    
T  11424835 atccttgtaaaataaagattcttcaggattgtcccctaactcctatgactcagctgaatctcttac 11424900  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 22056561 - 22056620
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||||| | || ||||||| ||||||||    
T  22056561 tccttgtaaaatgaagattcttcaagattgccccctgagctctgtgactcagcagaatct 22056620  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 6000650 - 6000590
Alignment:
Q  179 atccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||||||||| |||| ||||||   |||| ||||||| ||||||||    
T  6000650 atccttgtaaaataaagattcttcaggattgccccctatgccctgtgactcagcagaatct 6000590  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 24914517 - 24914576
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    |||||||||||| |||||||||||||||| |||||| |  ||| ||||||| ||||||||    
T  24914517 tccttgtaaaatgaagattcttcaagattgccccctaagtcctgtgactcagcagaatct 24914576  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 5999793 - 5999847
Alignment:
Q  185 gtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||||||||||||||||| |||| |||||||| | || ||||||| ||||||||    
T  5999793 gtaaaataaagattcttcaggattgccccctgagctctgtgactcagcagaatct 5999847  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 33485054 - 33485016
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgac 218  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  33485054 tccttgtaaaataaagattcttcaggattgccccctgac 33485016  T

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Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 9026 - 8962
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||||||||||| |||| || ||| |||||||||||||| || ||||||||||    
T  9026 tccttgtaaaataaagattcttcaggattgcctcctaacccctatgactcagcaaaatctcttac 8962  T

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Target: scaffold0093; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 2741 - 2802
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||| |||| |||| |||||| | |||||||||||| |||||||||||||    
T  2741 ttgtaaaataaagattattcaggattgccccctaatccctatgactcagcagaatctcttac 2802  T

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Target: scaffold0093; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 7364 - 7425
Alignment:
Q  183 ttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttac 244  Q
    |||||||||||||||| |||| |||| |||||| | |||||||||||| |||||||||||||    
T  7364 ttgtaaaataaagattattcaggattgccccctaatccctatgactcagcagaatctcttac 7425  T

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Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 265 - 206
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatct 239  Q
    ||||| |||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||    
T  265 tccttataaaatgaagattcttcaagattgccccctgagccctttgactcagcagaatct 206  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 30803 - 30882
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctcttacatgacgctcatgtga 259  Q
    ||||||||||||||||||||||||  ||| ||||| | | ||||||| ||| ||||||||||||| || |||| ||||||    
T  30803 tccttgtaaaataaagattcttcagtatttccccccggctcctatgattcagcagaatctcttacgtggcgctgatgtga 30882  T

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Target: scaffold0129; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 37370 - 37325
Alignment:
Q  180 tccttgtaaaataaagattcttcaagattaccccctgacccctatg 225  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||    
T  37370 tccttgtaaaataaagattcttcaggattgccccctaacccctatg 37325  T

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Target: scaffold0933 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 2702 - 2633
Alignment:
Q  174 attttatccttgtaaaataaagattcttcaagattaccccctgacccctatgactcatcagaatctctta 243  Q
    ||||| |||||||||||||||||||||||| ||||  | | ||| |||||| ||||| ||||||||||||    
T  2702 attttgtccttgtaaaataaagattcttcaggattgtctcatgatccctatcactcagcagaatctctta 2633  T

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