View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_high_49 (Length: 265)
Name: NF1153_high_49
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_49 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 46518368 - 46518136
Alignment:
| Q |
31 |
aaaagacattgtatcatcacgaataagacaaccaaaatcacccaaattagattgaaaaaacataatgtcgtatatgttaagagccactgagctaaaatta |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46518368 |
aaaagacatcgtatcatcacgaataagacaaccaaaatcacccaaattagattgaaaaaacataatgtcgtatatgttaagagccactgagctaaaatta |
46518269 |
T |
|
| Q |
131 |
agttgaatccaactaacaacacacacaggcggttgaatacggggatcaggagaagcgactgctttaaaaacataatgcaaatgggagaacattcgtaaaa |
230 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
46518268 |
agttgaatccaagtaacaaca--cacaggcggttgaatacggggatcaggagaagcaactgctttaaaaaaataatgcaaatgggagaacattcgtaaca |
46518171 |
T |
|
| Q |
231 |
aatatatttttgaaaattgaagagtctgtgtacca |
265 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
46518170 |
aatgtatttttgaaaattgaagagtttgtgtacca |
46518136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 11392540 - 11392657
Alignment:
| Q |
107 |
ttaagagccactgagctaaaattaagttgaatccaactaacaacacacacaggcggttgaatac---ggggatcaggagaagcgactgctttaaaaacat |
203 |
Q |
| |
|
|||||||||| ||||| ||| ||| || |||||||| | || || ||||||||||||||||||| |||||| | ||||||| | |||||||| || || |
|
|
| T |
11392540 |
ttaagagccattgagccaaagttaggtcgaatccaagtgacgactcacacaggcggttgaatacgatggggattaagagaagcaaatgctttaagaatat |
11392639 |
T |
|
| Q |
204 |
aatgcaaatgggagaaca |
221 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
11392640 |
aatgcaaaagggagaaca |
11392657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University