View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_59 (Length: 248)
Name: NF1153_high_59
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 36535811 - 36535983
Alignment:
| Q |
1 |
cctaaataaaaaaagtttcaatttttaattatatagtaatcataaatttcacgnnnnnnnnnnnnccctatcatgcaatctattatcatcggaaattagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
36535811 |
cctaaataaaaaaagtttcaatttttaattatatagtaatcataagtttcacgttttctctctctctctatcatgcagtctattatcatcggaaattagg |
36535910 |
T |
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| Q |
101 |
gaaaatagcatcacaattaagctaaaaatattatgctgttttattagtagctatataatcaa-tttggattttg |
173 |
Q |
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||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
36535911 |
gaaaatagcattacaattaagctaaaaatgttatgctg-cctattagtagctatagaatcaattttggattttg |
36535983 |
T |
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