View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_67 (Length: 211)
Name: NF1153_high_67
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_67 |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36622842 - 36622920
Alignment:
| Q |
1 |
aattattttgaaagaagattctcaagagcaaggaagcagacatgacgtgtataatcttgtcaattatcaaaccaaagacactgatctat |
89 |
Q |
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| T |
36622842 |
aattattttgaaagaagattctcaagagcaaggaagcagacatgacg----------tgtcaattatcaaaccaaagacactgatctat |
36622920 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 36622966 - 36623010
Alignment:
| Q |
89 |
tattacaatttaactatcaaacttcggtaagcatcaacaatagaa |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36622966 |
tattacaatttaactatcaaacttcggtaagcatcaacaatagaa |
36623010 |
T |
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