View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_high_7 (Length: 457)
Name: NF1153_high_7
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 71 - 447
Target Start/End: Complemental strand, 8012395 - 8012019
Alignment:
| Q |
71 |
cttgatattattcttctccctcaataatcaaaacacatgaaaataatgacaatggtggaagcataatcaaaacatataaaataaaaatttaatgacaaag |
170 |
Q |
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| T |
8012395 |
cttgatattattcttctccctcaataatcaaaacacatgaaaataatgacaatggtggaagcataatcaaaacaaataaaataaaaatttaatgacaaag |
8012296 |
T |
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| Q |
171 |
ataatccatggcttaataatgaatttacattcaaagtatatggtatccatagatgcataatgaagcatatggttgagaaagagtgttacacattattaac |
270 |
Q |
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| T |
8012295 |
ataatccatggcttaataatgaatttacattcaaagtatatggtatccatagatgcataatgaagcatatggttgagaaagagtgttacacattattaac |
8012196 |
T |
|
| Q |
271 |
atctgatgattttcgaccatccaaaacaccctctttgttgaaaaattcaatgcaatcggaaatggcttcattgtaatgagaataagatgaataatatgaa |
370 |
Q |
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| T |
8012195 |
atctgatgattttcgaccatccaaaacaccctctttgttgaaaaattcaatgcaatcggaaatggcttcattgtaatgagaataagatgaataatatgaa |
8012096 |
T |
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| Q |
371 |
ctgcatgaagtctttggtggttcaaacctttcagaatttctgtgccttgatgatgaatctcttgatgatgacctatg |
447 |
Q |
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| T |
8012095 |
ctgcatgaagtctttggtggttcaaacctttcagaatttctgtgccttgatgatgaatctcttgatgatgacctatg |
8012019 |
T |
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