View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_1 (Length: 871)

Name: NF1153_low_1
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_1
NF1153_low_1
[»] chr5 (21 HSPs)
chr5 (8-843)||(37869084-37869922)
chr5 (319-478)||(21144023-21144181)
chr5 (319-488)||(20355146-20355314)
chr5 (319-447)||(13153599-13153726)
chr5 (255-439)||(15399611-15399797)
chr5 (358-488)||(42778936-42779064)
chr5 (319-427)||(17668743-17668850)
chr5 (337-402)||(20628040-20628105)
chr5 (338-402)||(31567818-31567882)
chr5 (342-397)||(38082947-38083002)
chr5 (335-436)||(35687296-35687402)
chr5 (339-373)||(38083061-38083095)
chr5 (335-370)||(4561682-4561717)
chr5 (335-373)||(11721524-11721562)
chr5 (335-373)||(23159692-23159730)
chr5 (335-373)||(25919815-25919853)
chr5 (335-373)||(29691216-29691254)
chr5 (335-373)||(38874417-38874455)
chr5 (335-373)||(41123223-41123261)
chr5 (333-394)||(6527313-6527374)
chr5 (405-454)||(10819543-10819592)
[»] chr3 (28 HSPs)
chr3 (255-479)||(55257639-55257864)
chr3 (354-488)||(25124866-25125000)
chr3 (319-466)||(43426358-43426505)
chr3 (333-469)||(17582462-17582600)
chr3 (255-450)||(7308179-7308373)
chr3 (319-438)||(23070058-23070176)
chr3 (279-488)||(17030660-17030869)
chr3 (340-454)||(7013249-7013363)
chr3 (319-427)||(25159022-25159129)
chr3 (337-451)||(30226238-30226352)
chr3 (319-402)||(5303668-5303750)
chr3 (335-436)||(37050164-37050265)
chr3 (319-428)||(18359295-18359403)
chr3 (338-439)||(45008056-45008158)
chr3 (332-370)||(1347666-1347704)
chr3 (319-373)||(17030593-17030645)
chr3 (335-373)||(48689330-48689368)
chr3 (359-427)||(20275533-20275601)
chr3 (335-373)||(300425-300463)
chr3 (335-373)||(5572212-5572249)
chr3 (335-373)||(13041442-13041480)
chr3 (335-373)||(13049519-13049557)
chr3 (319-373)||(18359450-18359503)
chr3 (335-373)||(25387665-25387703)
chr3 (335-373)||(26770000-26770038)
chr3 (335-373)||(52839378-52839416)
chr3 (412-454)||(54571292-54571334)
chr3 (375-420)||(22438731-22438776)
[»] chr2 (27 HSPs)
chr2 (319-488)||(42223156-42223325)
chr2 (319-454)||(16590583-16590716)
chr2 (319-478)||(41906132-41906289)
chr2 (319-454)||(35791130-35791264)
chr2 (335-454)||(31989489-31989607)
chr2 (319-451)||(11478052-11478184)
chr2 (255-427)||(11915181-11915352)
chr2 (338-454)||(31397395-31397510)
chr2 (335-454)||(31377684-31377803)
chr2 (319-437)||(41567315-41567432)
chr2 (346-417)||(29878811-29878882)
chr2 (375-435)||(23381343-23381403)
chr2 (379-450)||(13315985-13316055)
chr2 (335-373)||(17188731-17188769)
chr2 (336-373)||(15580626-15580663)
chr2 (337-436)||(959662-959761)
chr2 (333-372)||(18155450-18155489)
chr2 (335-373)||(15543794-15543832)
chr2 (335-373)||(16139057-16139095)
chr2 (335-373)||(16204388-16204426)
chr2 (335-373)||(19272920-19272958)
chr2 (335-373)||(25293416-25293453)
chr2 (335-373)||(30497407-30497445)
chr2 (319-373)||(35791059-35791112)
chr2 (335-373)||(38128019-38128057)
chr2 (341-402)||(24486596-24486657)
chr2 (329-370)||(30602594-30602635)
[»] chr7 (33 HSPs)
chr7 (323-478)||(9689291-9689446)
chr7 (332-478)||(43393849-43393996)
chr7 (319-488)||(1853233-1853398)
chr7 (319-488)||(42957424-42957593)
chr7 (319-469)||(3092292-3092441)
chr7 (329-478)||(15635228-15635378)
chr7 (274-427)||(2936144-2936294)
chr7 (329-454)||(45687698-45687822)
chr7 (358-469)||(11625113-11625224)
chr7 (319-427)||(24812925-24813032)
chr7 (329-454)||(15011935-15012060)
chr7 (319-416)||(19377094-19377191)
chr7 (319-454)||(27082594-27082728)
chr7 (319-454)||(27195573-27195707)
chr7 (319-428)||(25601798-25601906)
chr7 (323-427)||(10394471-10394574)
chr7 (335-403)||(28696661-28696729)
chr7 (340-438)||(27484941-27485040)
chr7 (319-427)||(14675581-14675681)
chr7 (340-402)||(22859342-22859404)
chr7 (319-372)||(2936339-2936391)
chr7 (405-454)||(18268280-18268329)
chr7 (400-441)||(26876617-26876658)
chr7 (335-373)||(2300901-2300938)
chr7 (319-373)||(8391027-8391079)
chr7 (335-373)||(17051895-17051933)
chr7 (335-373)||(21022469-21022507)
chr7 (492-546)||(25583989-25584043)
chr7 (319-373)||(27484820-27484872)
chr7 (337-419)||(28543319-28543400)
chr7 (335-373)||(35158262-35158299)
chr7 (320-373)||(15011865-15011917)
chr7 (319-404)||(25898629-25898713)
[»] chr4 (28 HSPs)
chr4 (323-478)||(13555668-13555823)
chr4 (319-488)||(5283732-5283900)
chr4 (319-488)||(8810010-8810178)
chr4 (329-468)||(42161367-42161507)
chr4 (319-451)||(49277727-49277858)
chr4 (333-451)||(49533201-49533319)
chr4 (319-428)||(16875937-16876045)
chr4 (319-454)||(9780392-9780528)
chr4 (319-428)||(16734243-16734350)
chr4 (319-419)||(8678889-8678989)
chr4 (340-402)||(25786326-25786388)
chr4 (320-428)||(21744891-21744998)
chr4 (336-399)||(29172618-29172681)
chr4 (335-373)||(16589236-16589274)
chr4 (342-383)||(18509185-18509226)
chr4 (329-370)||(29172756-29172797)
chr4 (320-372)||(49277880-49277931)
chr4 (335-373)||(3652529-3652567)
chr4 (319-373)||(9780546-9780599)
chr4 (335-373)||(27626925-27626963)
chr4 (335-373)||(29104419-29104457)
chr4 (319-373)||(29700563-29700616)
chr4 (335-373)||(36395414-36395452)
chr4 (255-301)||(44005712-44005757)
chr4 (335-373)||(49166902-49166940)
chr4 (322-372)||(49533131-49533180)
chr4 (319-372)||(23091876-23091928)
chr4 (329-362)||(37589620-37589653)
[»] scaffold0004 (1 HSPs)
scaffold0004 (322-467)||(82300-82444)
[»] chr8 (29 HSPs)
chr8 (319-467)||(9235440-9235587)
chr8 (255-468)||(23288999-23289212)
chr8 (319-488)||(5600247-5600413)
chr8 (319-488)||(5640207-5640373)
chr8 (338-454)||(13373258-13373373)
chr8 (358-488)||(14698164-14698293)
chr8 (337-451)||(24375771-24375884)
chr8 (347-471)||(24528887-24529011)
chr8 (332-451)||(23245660-23245779)
chr8 (329-404)||(11908474-11908549)
chr8 (329-420)||(12719159-12719249)
chr8 (337-399)||(8980741-8980803)
chr8 (319-401)||(28786366-28786447)
chr8 (319-373)||(13980023-13980076)
chr8 (335-373)||(10761679-10761717)
chr8 (335-373)||(25653784-25653822)
chr8 (341-373)||(28786519-28786551)
chr8 (336-372)||(28999510-28999546)
chr8 (319-362)||(24754628-24754670)
chr8 (335-373)||(9662273-9662311)
chr8 (335-373)||(11830433-11830471)
chr8 (335-373)||(12478831-12478869)
chr8 (335-373)||(13558799-13558837)
chr8 (335-373)||(32684641-32684679)
chr8 (335-373)||(34845363-34845401)
chr8 (335-373)||(41509459-41509497)
chr8 (332-425)||(11311297-11311390)
chr8 (336-401)||(25057020-25057085)
chr8 (336-373)||(36637251-36637288)
[»] chr1 (31 HSPs)
chr1 (340-488)||(25059885-25060033)
chr1 (319-471)||(5469440-5469592)
chr1 (319-427)||(13437010-13437117)
chr1 (319-454)||(33864186-33864321)
chr1 (319-454)||(33916601-33916736)
chr1 (319-478)||(17890132-17890290)
chr1 (319-420)||(7261487-7261587)
chr1 (338-449)||(24023179-24023289)
chr1 (319-454)||(44078664-44078798)
chr1 (255-392)||(22315145-22315282)
chr1 (327-419)||(5882997-5883089)
chr1 (339-451)||(44228413-44228524)
chr1 (329-402)||(15654059-15654132)
chr1 (337-440)||(16639555-16639659)
chr1 (338-454)||(22151971-22152087)
chr1 (346-409)||(23621217-23621280)
chr1 (346-409)||(23737996-23738059)
chr1 (346-402)||(23652563-23652619)
chr1 (319-369)||(9240531-9240580)
chr1 (335-373)||(19967820-19967858)
chr1 (319-402)||(9240654-9240736)
chr1 (335-373)||(21770981-21771019)
chr1 (413-491)||(22315288-22315365)
chr1 (335-373)||(23161905-23161942)
chr1 (335-373)||(26190988-26191026)
chr1 (335-373)||(27666174-27666212)
chr1 (319-373)||(33864115-33864168)
chr1 (319-373)||(33916754-33916807)
chr1 (319-373)||(44228339-44228392)
chr1 (329-378)||(6667399-6667448)
chr1 (336-373)||(22387224-22387261)
[»] chr6 (19 HSPs)
chr6 (329-488)||(9044531-9044690)
chr6 (329-471)||(25167002-25167144)
chr6 (338-471)||(9662835-9662968)
chr6 (319-450)||(3816552-3816681)
chr6 (341-417)||(20757608-20757684)
chr6 (340-402)||(33198608-33198670)
chr6 (255-373)||(3816703-3816820)
chr6 (338-420)||(6759742-6759824)
chr6 (319-369)||(33200018-33200067)
chr6 (319-402)||(334912-334993)
chr6 (335-373)||(1227934-1227972)
chr6 (335-373)||(2270742-2270780)
chr6 (330-372)||(18274361-18274403)
chr6 (335-373)||(21544388-21544426)
chr6 (335-373)||(29942605-29942642)
chr6 (335-372)||(686551-686587)
chr6 (336-373)||(16119918-16119955)
chr6 (335-372)||(22495780-22495817)
chr6 (336-373)||(31174052-31174089)
[»] scaffold0067 (1 HSPs)
scaffold0067 (340-455)||(25844-25960)
[»] scaffold0188 (1 HSPs)
scaffold0188 (255-417)||(13286-13447)
[»] scaffold0003 (1 HSPs)
scaffold0003 (335-409)||(306688-306762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (341-428)||(23194-23281)
[»] scaffold0142 (2 HSPs)
scaffold0142 (329-384)||(34509-34564)
scaffold0142 (380-488)||(34884-34993)
[»] scaffold1462 (1 HSPs)
scaffold1462 (335-373)||(337-375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (335-373)||(63111-63149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (319-373)||(145149-145201)
[»] scaffold0002 (1 HSPs)
scaffold0002 (335-373)||(432475-432513)


Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 843
Target Start/End: Complemental strand, 37869922 - 37869084
Alignment:
Q  8 cgaagaatataataaaaatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaaannnnnnnnggtggtcgaggtctgaa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||| ||||||    
T  37869922 cgaacaatataataaaaatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaagttttttttggtggttgagatctgaa 37869823  T
Q  108 cctcgaactttgtctctatcaactgagttaaacttacgagagnnnnnnnngtaacaagtttgtttaaaggtagttttcaccaaagaaaaaa-taatataa 206  Q
    ||||||||||||||| ||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37869822 cctcgaactttgtctttatcaactgagctaaacttacgagagaaaaaaa-gtaacaagtttgtttaaaggtagttttcaccaaagaaaaaaataatataa 37869724  T
Q  207 aattacnnnnnnnnaaaggaccatgtaaaaggacttgatatnnnnnnngggttaatatatgtttaatctccagtaatattaacgattttcggtttatccc 306  Q
    ||||||        |||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  37869723 aattacttttttttaaaggaccatgtaaaaggacttgatataaaaaaagggttaatatatgtttaatctcctgtaatattaacgattttcggtttatctc 37869624  T
Q  307 ctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcc 406  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869623 ctgtaaaaaaaattgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcc 37869524  T
Q  407 ccttataatttgagagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgattttttaggatcaggctcttct 506  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37869523 ccttataatttgagagaatttctatttacctcctgccatatcatcgatatttcagtttaccccctcccatatcattgattttttaggatcaggctcttct 37869424  T
Q  507 aaagtgagcgattcactgtagagtatgaagtgagtaatatattatcaaccattcaaccattaactaacaaatcaagggtggatattatgtaaatgcgtaa 606  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37869423 aaagtgagcgattcaccgtagagtatgaagtgagtaatatattatcaaccattcaaccattaactaacaaatcaaggatggatattatgtaaatgcgtaa 37869324  T
Q  607 caaataatgaatgtgttgtaatatcgatgctttatgttttactttatatgagtcaaaccattttttaaaagtctgtcctcataatttta---tatcactt 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||   ||||||||    
T  37869323 caaataatgaatgtgttgtaatatcgatgctttatgttttactttatacgagtcaaaccattttttaatagtctgtcctcataattttatactatcactt 37869224  T
Q  704 atacttgaaatagggagttcaataacaaaaaccaattcaatttatcttgataacaatatgggaaaatgggttgttggctgtaatttgtaagcatgtaaca 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37869223 atacttgaaatagggagttcaataacaaaaaccaattcaatttatctttataacagtatgggaaaatgggttgttggctgtaatttgtaagcatgtaaca 37869124  T
Q  804 gctcatgttatttttgtgatttaatgagaatgtttcatgt 843  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  37869123 gctcatgttgtttttgtgatttaatgagaatgtttcatgt 37869084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 319 - 478
Target Start/End: Original strand, 21144023 - 21144181
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||    
T  21144023 ttgtttagatt-ccaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttgatgtacttttgccccttgtaatttg 21144121  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    |||||||||   ||||||| |||  ||||||||||||||| |||||||||| | ||||||    
T  21144122 agagaattttggtttaccctctgtcatatcatcgatattttagtttaccccttgccatat 21144181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 20355314 - 20355146
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||| | ||||||||||||||| |||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||||||| |||||||    
T  20355314 ttgtttagatt-ccaatcctgtaatttgaagattttttgattttgaaccttgatggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttg 20355216  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    |  |||||||  |||||||||||| |||||||||||||||  ||||||||||| |||||| || ||||||    
T  20355215 aaggaatttcggtttaccccctgcaatatcatcgatattttggtttaccccctaccatatcatcgatttt 20355146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 319 - 447
Target Start/End: Original strand, 13153599 - 13153726
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| ||||||||||||||||||||||  || |||||||||||||||  ||||||| ||||||||||| |||||||| | ||||| |||||||    
T  13153599 ttgtttagatt-ccaaccttgtaatttgaagatttctttattttggaccttcatagcatcaaaatacaaaatttacggtactttcgtcccttgtaatttg 13153697  T
Q  419 agagaatttctatttaccccctgctatat 447  Q
    ||||||||||  |||||||||||| ||||    
T  13153698 agagaatttcggtttaccccctgccatat 13153726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 255 - 439
Target Start/End: Original strand, 15399611 - 15399797
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccc-tgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 353  Q
    ||||||||||||||||| ||||| ||||||||| ||||||  |||||| | || |||        ||||||||||  |||||| |||||||||||||||     
T  15399611 gggttaatatatgtttactctcctgtaatattagcgatttctggtttacctccatgtaaaaaaatttgtttagatc-ccaaccctgtaatttgaagattt 15399709  T
Q  354 tttg--attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 439  Q
    |||   |||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||    
T  15399710 ttttttattttggaccttcataacatcaaattacaaaatttaaggtactttcgccccttgtaatttgagataatttcgatttaccccc 15399797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 42779064 - 42778936
Alignment:
Q  358 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 457  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||  ||||  ||||   ||||||||||||||    
T  42779064 attttggaccttcatgacatcaaattacaaaatttaaggtactttcg-cccttgtaatttgagagaatttcggttta-tccctatcatatcatcgatatt 42778967  T
Q  458 tcagtttaccccctcccatattattgatttt 488  Q
    |||| ||||||||| |||||| |||||||||    
T  42778966 tcaggttaccccctgccatatcattgatttt 42778936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 17668850 - 17668743
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||  |||||| |  ||||||||||||||||| ||||| | |||||||    
T  17668850 ttgttaagatttc-aacattgtaatttaaagattctttgattttggactttcatgatatcaaaatttaaaatttaaggtactttcgccccctgtaatttg 17668752  T
Q  419 agagaattt 427  Q
    |||||||||    
T  17668751 agagaattt 17668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 20628040 - 20628105
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    |||||||||||| |||||||| |||||||||||| || ||||||||||||||||||| ||||||||    
T  20628040 ttgtaatttgaaaattctttggttttggaccttcttggcatcaaattacaaaatttatggtacttt 20628105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 31567882 - 31567818
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||  |||||||    
T  31567882 tgtaatttgaagattttttggttttggaccttcatgatatcaaattacaaaatttatagtacttt 31567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 38082947 - 38083002
Alignment:
Q  342 atttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggt 397  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  38082947 atttgaagattctttgattttgaacctacatagcatcaaattacgaaatttaaggt 38083002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 35687296 - 35687402
Alignment:
Q  335 ccttgtaatttgaagattctttgatt-----ttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttct 429  Q
    |||||||||||||||||| |||||||     ||||||||||||  |||||||||||||||||||  ||||||  ||||||   ||||||||  ||||||     
T  35687296 ccttgtaatttgaagattttttgattacattttggaccttcatagcatcaaattacaaaatttatagtacttccgcccctgtaaatttgagcaaatttcg 35687395  T
Q  430 atttacc 436  Q
    |||||||    
T  35687396 atttacc 35687402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 373
Target Start/End: Complemental strand, 38083095 - 38083061
Alignment:
Q  339 gtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||||||||||||||||||||    
T  38083095 gtaatttgaagattctttgattttggaccttcatg 38083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 4561682 - 4561717
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttc 370  Q
    |||||||||||||||||| |||||||||||||||||    
T  4561682 ccttgtaatttgaagattttttgattttggaccttc 4561717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 11721562 - 11721524
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  11721562 ccttgtaatttgaagattttttggttttggaccttcatg 11721524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 23159730 - 23159692
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  23159730 ccttgtaatttgaagattttttggttttggaccttcatg 23159692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 25919853 - 25919815
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  25919853 ccttgtaatttgaagattttttggttttggaccttcatg 25919815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 29691254 - 29691216
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29691254 ccttgtaatttgaagattttttggttttggaccttcatg 29691216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 38874417 - 38874455
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  38874417 ccttgtaatttgaagattttttggttttggaccttcatg 38874455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 41123223 - 41123261
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  41123223 ccttgtaatttgaagattttttggttttggaccttcatg 41123261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 6527313 - 6527374
Alignment:
Q  333 aaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaa 394  Q
    |||| ||| ||||||||||| |||| |||||||  |||||| ||| ||||||||||||||||    
T  6527313 aaccctgtgatttgaagattatttggttttggattttcatgacataaaattacaaaatttaa 6527374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 10819543 - 10819592
Alignment:
Q  405 ccccttataatttgagagaatttctatttaccccctgctatatcatcgat 454  Q
    |||||| |||||||||| |||||| ||||||||||||| ||||| |||||    
T  10819543 ccccttgtaatttgagaaaatttcgatttaccccctgccatatcttcgat 10819592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 9e-51; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 255 - 479
Target Start/End: Original strand, 55257639 - 55257864
Alignment:
Q  255 gggttaatatatgtttaatctcca-gtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 353  Q
    |||||||||||||||||  | ||  ||||||||| |||||| ||||||| |||||||        ||||||||||| |||||| | |||||||||||||     
T  55257639 gggttaatatatgtttaccccccctgtaatattagcgatttccggtttaccccctgtaaaaaaaattgtttagatt-ccaaccctataatttgaagattt 55257737  T
Q  354 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttac-cccctgctatatcatcg 452  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||| ||||||| |||||||||    
T  55257738 ttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttataatttgatagaatttcagtttacacccctgccatatcatcg 55257837  T
Q  453 atatttcagtttaccccctcccatatt 479  Q
    ||||||||||||||||| | |||||||    
T  55257838 atatttcagtttaccccttgccatatt 55257864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 354 - 488
Target Start/End: Original strand, 25124866 - 25125000
Alignment:
Q  354 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcga 453  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||  |||||||||||| ||||||||||    
T  25124866 tttgattttggaccttcatggcatcaaattataaaatttaaggtactttcgccccttgtaatttgggagaatttcagtttaccccctgccatatcatcga 25124965  T
Q  454 tatttcagtttaccccctcccatattattgatttt 488  Q
    |||||||||||||||||| |||||| || ||||||    
T  25124966 tatttcagtttacccccttccatatcatcgatttt 25125000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 319 - 466
Target Start/End: Complemental strand, 43426505 - 43426358
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| | |||| ||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||| | |||||||    
T  43426505 ttgtttagatt-cgaaccctgtaatttgaagattttttgattttagaccttcatagcatcaaattacaaaatttaaggtacttttgccccctgtaatttg 43426407  T
Q  419 agagaatttctattta-ccccctgctatatcatcgatatttcagtttac 466  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  43426406 agagaatttcggtttacccccctgccatatcatcgatatttcagtttac 43426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 333 - 469
Target Start/End: Complemental strand, 17582600 - 17582462
Alignment:
Q  333 aaccttgtaatttgaagattctttg--attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttcta 430  Q
    |||||||||||||||||||| |||   |||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||      
T  17582600 aaccttgtaatttgaagatttttttttattttggaccttcatagcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagattttcgg 17582501  T
Q  431 tttaccccctgctatatcatcgatatttcagtttacccc 469  Q
    |||||| ||||| |||| ||||||||||||||| |||||    
T  17582500 tttacctcctgccatataatcgatatttcagttaacccc 17582462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 255 - 450
Target Start/End: Complemental strand, 7308373 - 7308179
Alignment:
Q  255 gggttaatatatgtttaatctc-cagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 353  Q
    |||||||||||||||||| | | | ||||||||| ||||||  |||||| |||||||        ||||| ||||| |||||| | |||||||||||||     
T  7308373 gggttaatatatgtttaacccctctgtaatattagcgatttctggtttaccccctgtaaaaaaaattgttcagatt-ccaaccctataatttgaagattt 7308275  T
Q  354 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcat 450  Q
    ||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||    
T  7308274 ttttatttttgaccttcatggcatcaaattacaaaatttaaggtactttcgcccc-tgtaatttgagagaatttcggtttaccccctgccatatcat 7308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 319 - 438
Target Start/End: Original strand, 23070058 - 23070176
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| ||||| ||||||| |||||| |||||||||| |||||| || |||||||||| ||||||||||||||||| ||||||| |||||||    
T  23070058 ttgtttagatttc-aacctagtaatttaaagattttttgattttgaaccttcgtgacatcaaattataaaatttaaggtactttcgccccttctaatttg 23070156  T
Q  419 agagaatttctatttacccc 438  Q
    |||||||||| |||||||||    
T  23070157 agagaatttcgatttacccc 23070176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 279 - 488
Target Start/End: Complemental strand, 17030869 - 17030660
Alignment:
Q  279 gtaatattaacgattttcggtttat-cccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtca 376  Q
    ||||||||| |||||| |||||||| |||||||        |||||| |||||| |||| | |||||| |||||| ||| ||||||||||||||||| ||    
T  17030869 gtaatattagcgatttccggtttattcccctgtaaaaaactttgttttgatttc-aaccctctaatttaaagatttttttgattttggaccttcatggca 17030771  T
Q  377 tcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccat 476  Q
    ||||||||||||||||||||||||||  |||| | ||| ||||||||||||   |||||| ||||| |||||||||||||||||| ||||| |||  |||    
T  17030770 tcaaattacaaaatttaaggtactttcacccc-tgtaaattgagagaattttggtttacctcctgccatatcatcgatatttcaggttaccacctgacat 17030672  T
Q  477 attattgatttt 488  Q
    || |||||||||    
T  17030671 atcattgatttt 17030660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 340 - 454
Target Start/End: Original strand, 7013249 - 7013363
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 439  Q
    ||||||||||||| ||||||||||||| ||||||  |||||||||||||||||||| |||||| ||||| | ||||||||||||||||  ||||||||||    
T  7013249 taatttgaagattatttgattttggactttcatggtatcaaattacaaaatttaagatactttcgccccatgtaatttgagagaatttagatttaccccc 7013348  T
Q  440 tgctatatcatcgat 454  Q
    ||| || ||||||||    
T  7013349 tgccatgtcatcgat 7013363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 25159129 - 25159022
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||| ||| ||| | | |||||||    
T  25159129 ttgtttagatt-ctaaccttgtaatttgaatattttttgattttggacgttcatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttg 25159031  T
Q  419 agagaattt 427  Q
    |||||||||    
T  25159030 agagaattt 25159022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 337 - 451
Target Start/End: Complemental strand, 30226352 - 30226238
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 436  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||  |||||| || ||||||  |||||   ||||||    
T  30226352 ttgtaatttgaagattctttgattttggaccttcatgacaacaaattacaaaatttatggtactttcaccccttgtagtttgagcaaattttagtttacc 30226253  T
Q  437 ccctgctatatcatc 451  Q
    |||||  ||||||||    
T  30226252 ccctgtcatatcatc 30226238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 5303750 - 5303668
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||| |||||| |||||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||||||||    
T  5303750 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttagaccttcatgacatcaaattacagaacttaaggtacttt 5303668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 335 - 436
Target Start/End: Complemental strand, 37050265 - 37050164
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcat-gtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattt 433  Q
    |||| ||||||||||||||||||||||||||| ||| | | |||||| ||||||||||||||||||||| ||||||| |||||||||  |||||| ||||    
T  37050265 ccttataatttgaagattctttgattttggacattctttgacatcaa-ttacaaaatttaaggtactttcgccccttgtaatttgagcaaatttcgattt 37050167  T
Q  434 acc 436  Q
    |||    
T  37050166 acc 37050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 18359295 - 18359403
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| |||||||||||||||||||  |||| ||  | |||| |||||||||||||||||||||||||||| | ||  | |||||||    
T  18359295 ttgtttagatt-ccaaccctgtaatttgaagattctttagttttagatatacatggcatcaaattacaaaatttaaggtactttagtccgctgtaatttg 18359393  T
Q  419 agagaatttc 428  Q
    ||||||||||    
T  18359394 agagaatttc 18359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 439
Target Start/End: Complemental strand, 45008158 - 45008056
Alignment:
Q  338 tgtaatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 436  Q
    ||||||||||||||| |||  ||||||||| ||| || |||||||||||||||||||||| ||||| ||||||| |||||||| | ||||||  ||||||    
T  45008158 tgtaatttgaagattttttttattttggacattcttggcatcaaattacaaaatttaaggaactttcgccccttgtaatttgataaaatttcggtttacc 45008059  T
Q  437 ccc 439  Q
    |||    
T  45008058 ccc 45008056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 370
Target Start/End: Original strand, 1347666 - 1347704
Alignment:
Q  332 caaccttgtaatttgaagattctttgattttggaccttc 370  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  1347666 caaccttgtaatttgaatattctttgattttggaccttc 1347704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 17030593 - 17030645
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  17030593 ttgtttagatt-ccaaccttgtaatttgaagatt-tttggttttggaccttcatg 17030645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 48689368 - 48689330
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  48689368 ccttgtaatttgaagattttttgattttggaccttcatg 48689330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 20275601 - 20275533
Alignment:
Q  359 ttttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 427  Q
    ||||||||||| ||| ||||||||| |||||||||||||| |||||||   | |||||| |||||||||    
T  20275601 ttttggacctttatgacatcaaatttcaaaatttaaggtatttttgccaactgtaatttaagagaattt 20275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 300463 - 300425
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  300463 ccttgtaatttgaagattttttggttttggaccttcatg 300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 5572249 - 5572212
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5572249 ccttgtaatttgaagatt-tttgattttggaccttcatg 5572212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 13041442 - 13041480
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13041442 ccttgtaatttgaagattttttggttttggaccttcatg 13041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 13049519 - 13049557
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13049519 ccttgtaatttgaagattttttggttttggaccttcatg 13049557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 18359503 - 18359450
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||| ||||||||||||| |||||||||||  ||| ||||||||||    
T  18359503 ttgtttagatttc-aaccttgtaatttaaagattctttggatttagaccttcatg 18359450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 25387665 - 25387703
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  25387665 ccttgtaatttcaagattctttgattttagaccttcatg 25387703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 26770000 - 26770038
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  26770000 ccttgtaatttgaagattttttgcttttggaccttcatg 26770038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 52839378 - 52839416
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  52839378 ccttgtaatttgaagattttttggttttggaccttcatg 52839416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 54571292 - 54571334
Alignment:
Q  412 taatttgagagaatttctatttaccccctgctatatcatcgat 454  Q
    |||||||||| ||||||  ||||||||||||||||||||||||    
T  54571292 taatttgagaaaatttccgtttaccccctgctatatcatcgat 54571334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 22438731 - 22438776
Alignment:
Q  375 catcaaattacaaaatttaaggtacttttgccccttataatttgag 420  Q
    |||||||||||||||||||  ||||||| ||||| |||||||||||    
T  22438731 catcaaattacaaaatttattgtactttcgccccctataatttgag 22438776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 42223325 - 42223156
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  42223325 ttgtttagatt-ccaaccctgtaatttgaagattttttgattttgaaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttg 42223227  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttacc-ccctcccatattattgatttt 488  Q
    | ||||||||  |||||||||||  |||||||| ||||||| ||||||| |||| |||||| || ||||||    
T  42223226 aaagaatttcggtttaccccctgacatatcatcaatatttcggtttaccaccctaccatatcatcgatttt 42223156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 16590716 - 16590583
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||| ||||| ||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| |||||    
T  16590716 ttgtttatatttcaaacct-gtaatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaaggtactttcgcctcctat-atttg 16590619  T
Q  419 agagaatttctatttaccccctgctatatcatcgat 454  Q
    |||||||||| ||||||||||| |||||||||||||    
T  16590618 agagaatttcgatttaccccctactatatcatcgat 16590583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 41906289 - 41906132
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| ||||||||| |  |||| |||  ||    
T  41906289 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttggacctttatggcatcaaattacaaaattttaggtactttcg-accttgtaacatg 41906192  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    ||||||||||  |||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  41906191 agagaatttcagtttaccccctgccatatcattgatatttcagtttacccccttccatat 41906132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 35791264 - 35791130
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| |||  |||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||| || |||||||    
T  35791264 ttgtttagatttc-aactctgtaatttaaagattctttgattttaaaccttcatgccatcaaattacaaaatttaaggtactttcgccctttgtaatttg 35791166  T
Q  419 agagaatttctatttaccccctgctatatcatcgat 454  Q
    |||| |||||  |||||||||||| |||||||||||    
T  35791165 agagtatttcggtttaccccctgccatatcatcgat 35791130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 31989607 - 31989489
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta 434  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| ||||  ||||||  ||||    
T  31989607 ccttgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttcgccccctataatatgagcaaatttcagttta 31989508  T
Q  435 ccccctgctatatcatcgat 454  Q
     ||||||| |||||||||||    
T  31989507 -cccctgccatatcatcgat 31989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 319 - 451
Target Start/End: Original strand, 11478052 - 11478184
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||| ||| |||||||    
T  11478052 ttgtttagatttc-aaccctgtaatttgaaaattctttggttttggaccttcatagcatcaaattacaaaatttaaggtactttcgcctcttgtaatttg 11478150  T
Q  419 agagaatttctatttaccc-cctgctatatcatc 451  Q
     || ||||||  ||||||| ||||| ||||||||    
T  11478151 ggataatttcggtttaccctcctgccatatcatc 11478184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 255 - 427
Target Start/End: Complemental strand, 11915352 - 11915181
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 354  Q
    |||||||||||||||||  | || ||||||||| | ||||||||||||   |||||        ||||||| ||||| |||  | ||||||||||||| |    
T  11915352 gggttaatatatgtttacccccctgtaatattagcaattttcggtttacttcctgtaaaaaatattgtttaaatttc-aactctataatttgaagatttt 11915254  T
Q  355 ttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 427  Q
    ||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| | ||||||||||||||||    
T  11915253 ttggttttggaccttcatgacatcaaattacaaaatttaaggcactttcgccccgtgtaatttgagagaattt 11915181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 454
Target Start/End: Complemental strand, 31397510 - 31397395
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 437  Q
    ||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||| | |||||| ||||||| ||||||||| | ||||| ||||||||    
T  31397510 tgtaatttgaagattatttggttttggaccttcatgacgtcaaatttcaaaatttatgatactttcgccccttgtaatttgagcg-atttcaatttaccc 31397412  T
Q  438 cctgctatatcatcgat 454  Q
    ||||| |||| ||||||    
T  31397411 cctgccatattatcgat 31397395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 454
Target Start/End: Complemental strand, 31377803 - 31377684
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta 434  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||  ||||||| ||| | | |||||||||  |||||   ||||    
T  31377803 ccttgtaatttgaagattatttggttttggaccttcatggcatcatattacaaaatttatagtactttcgcctcctgtaatttgagcaaattttggttta 31377704  T
Q  435 ccccctgctatatcatcgat 454  Q
     ||||||| |||||||||||    
T  31377703 acccctgccatatcatcgat 31377684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 319 - 437
Target Start/End: Original strand, 41567315 - 41567432
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||| ||| |||  |||||||| |||||||||||||||||| ||| | | |||||||    
T  41567315 ttgtttagatttc-aaccttgtaatttgaaaattattcgattttggatctttatggtatcaaatttcaaaatttaaggtactttcgcctcatgtaatttg 41567413  T
Q  419 agagaatttctatttaccc 437  Q
    || || ||| | |||||||    
T  41567414 agcgattttttgtttaccc 41567432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 29878811 - 29878882
Alignment:
Q  346 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 417  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||| | ||||| ||||||    
T  29878811 gaagattctttgattttggacattcatggcatcaaattacaaaatttatggtattttcgtcccttgtaattt 29878882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 23381403 - 23381343
Alignment:
Q  375 catcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttac 435  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||  |||||| ||||||    
T  23381403 catcaaattacaaaatttatggtactttcgccccttgtaatttgagtaaatttcgatttac 23381343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 13316055 - 13315985
Alignment:
Q  379 aaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcat 450  Q
    |||||||||||||| ||||||||| |||| |  |||||||| |||||||| ||||||||||||| |||||||    
T  13316055 aaattacaaaatttcaggtactttcgcccatg-taatttgaaagaatttcgatttaccccctgccatatcat 13315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 17188731 - 17188769
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17188731 ccttgtaatttgaagattttttgattttggaccttcatg 17188769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 15580663 - 15580626
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  15580663 cttgtaatttgaagattttttgattttggaccttcatg 15580626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 436
Target Start/End: Complemental strand, 959761 - 959662
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 436  Q
    ||||||| | |||||| ||| |||||| ||||| ||| ||| |||||  ||||||||||||||||| || ||||  ||||||||  |||||| |||||||    
T  959761 ttgtaatgtaaagattatttaattttgaacctttatgacattaaattttaaaatttaaggtactttcgctccttgaaatttgagcaaatttcaatttacc 959662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 372
Target Start/End: Complemental strand, 18155489 - 18155450
Alignment:
Q  333 aaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  18155489 aaccttgtaattcgaagattctttggttttggaccttcat 18155450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 15543794 - 15543832
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  15543794 ccttgtaatttgaagattttttggttttggaccttcatg 15543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 16139095 - 16139057
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  16139095 ccttgtaatttgaagattttttggttttggaccttcatg 16139057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 16204388 - 16204426
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  16204388 ccttgtaatttgaagattttttggttttggaccttcatg 16204426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 19272958 - 19272920
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  19272958 ccttgtaatttgaagattttttggttttggaccttcatg 19272920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 25293416 - 25293453
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25293416 ccttgtaatttgaagatt-tttgattttggaccttcatg 25293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 30497445 - 30497407
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  30497445 ccttgtaatttgaagattttttggttttggaccttcatg 30497407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 35791059 - 35791112
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  35791059 ttgtttagatt-ccaaccctgtaatttgaatattctctgtttttggaccttcatg 35791112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 38128057 - 38128019
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  38128057 ccttgtaatttgaagattttttggttttggaccttcatg 38128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 24486596 - 24486657
Alignment:
Q  341 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    |||||||| ||| |||  |||||||| |||||| ||||||||| ||||||||||| ||||||    
T  24486596 aatttgaaaattgtttagttttggactttcatgacatcaaatttcaaaatttaagatacttt 24486657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 30602635 - 30602594
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttc 370  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  30602635 ttccaaccttgtaatttaaagattctttgcttttagaccttc 30602594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 323 - 478
Target Start/End: Original strand, 9689291 - 9689446
Alignment:
Q  323 ttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 421  Q
    ||||||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  9689291 ttagatttc-aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgaga 9689389  T
Q  422 gaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    |||||||  |||||||||| | |||||||| ||||||| ||||||||||| ||||||    
T  9689390 gaatttcggtttaccccctaccatatcatcaatatttcggtttaccccctaccatat 9689446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 332 - 478
Target Start/End: Complemental strand, 43393996 - 43393849
Alignment:
Q  332 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctat 431  Q
    ||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||  ||||||||||||  |    
T  43393996 caaccctgtaatttgaagatttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgacccttgtaacgtgagagaatttcagt 43393897  T
Q  432 ttaccccctgctatatcatcgatatttcagttta-ccccctcccatat 478  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  43393896 ttaccccctgctataccatcgatatttcagtttatcccccttccatat 43393849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 1853398 - 1853233
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| | ||| |  ||||||    
T  1853398 ttgtttagatt-ccaaccttgtaatttgaagattttttgattttggaccttcatggcatcaaatttcaaaatttaaggtactttcgtcccctgaaatttg 1853300  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    ||||||||||   |||||||||||  ||||||||||||||| |||||||||||  ||||| || ||||||    
T  1853299 agagaatttc--gttaccccctgccttatcatcgatatttc-gtttaccccctgtcatatcatcgatttt 1853233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 319 - 488
Target Start/End: Original strand, 42957424 - 42957593
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| | |||| |||||||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||    
T  42957424 ttgtttagatt-ctaaccctgtaatttgaattttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgtcccttgtaatttg 42957522  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttac-cccctcccatattattgatttt 488  Q
    |||||||||| |||||||| |||  ||||| |||||||||||  |||| ||||| | |||| |||||||||    
T  42957523 agagaatttcgatttaccctctgtcatatcctcgatatttcatgttactcccctgctatatcattgatttt 42957593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 319 - 469
Target Start/End: Original strand, 3092292 - 3092441
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||  ||||||||  |||||||||| |||||||||||||||||  |||| |||||||||    
T  3092292 ttgtttagatttc-aaccttgtaatttaaagattttttgattttaaaccttcattacatcaaattataaaatttaaggtactttcaccccctataatttg 3092390  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttacccc 469  Q
    |||||||| |  |||||||||| | ||||||| ||||||||  ||||||||    
T  3092391 agagaattacggtttacccccttccatatcattgatatttcgatttacccc 3092441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 329 - 478
Target Start/End: Complemental strand, 15635378 - 15635228
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||||  ||||||||||||||  |||||||||| ||||| ||| ||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||    
T  15635378 ttccaactctgtaatttgaagatattttgattttgaacctttatgccatcaaatttcaaaatttatggtactttcgccccctataacttgagagaatttc 15635279  T
Q  429 tattta-ccccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
      |||| |||||| | |||||||||||||||| ||||||||| | ||||||    
T  15635278 gttttacccccctaccatatcatcgatatttcggtttaccccatgccatat 15635228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 2936144 - 2936294
Alignment:
Q  274 ctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||| ||||||||| ||||||||||||||| ||||||         |||||||||| |||||| ||||||||||| ||| |||| |||| ||||||||||    
T  2936144 ctcctgtaatattagcgattttcggtttatgccctgtaaaaaaa--tgtttagatt-ccaaccatgtaatttgaaaattatttggttttagaccttcatg 2936240  T
Q  374 tcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 427  Q
     |||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  2936241 acatcaaattacaaaatttaaggtactttcgccccctgtaatttgagagaattt 2936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 329 - 454
Target Start/End: Original strand, 45687698 - 45687822
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||||| |||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||  |||| ||||||||||||||||||     
T  45687698 ttccaaccctgtaatttgaagattctttgatttag-accttcatggcatcaaattataaaatttaaggtactttcaccccctataatttgagagaatttt 45687796  T
Q  429 tatttaccccctgctatatcatcgat 454  Q
      |||| ||||||  |||||||||||    
T  45687797 ggtttatcccctgtcatatcatcgat 45687822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 358 - 469
Target Start/End: Complemental strand, 11625224 - 11625113
Alignment:
Q  358 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 457  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||| || |||| |||||||||  |||||||||| | ||||||| ||||||    
T  11625224 attttggaccttcatgacatcaaattacataatttaaggtactttcgccccttgtagtttgtgagaatttcggtttaccccctaccatatcattgatatt 11625125  T
Q  458 tcagtttacccc 469  Q
    || |||||||||    
T  11625124 tcggtttacccc 11625113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 24813032 - 24812925
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||||||||   ||||| |||||||    
T  24813032 ttgtttagatttc-aaccctgtaatttgaagattctttggttttagacctttaaggcatcaaattacaaaatttaaggtactttcatcccttgtaatttg 24812934  T
Q  419 agagaattt 427  Q
    | |||||||    
T  24812933 aaagaattt 24812925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 329 - 454
Target Start/End: Complemental strand, 15012060 - 15011935
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||| | |||||||||||||||||||||||||| || |||| | ||||||||||||||||| |||||| ||||  ||    |||||||||||||||||    
T  15012060 ttccaatcctgtaatttgaagattctttgattttgaacattcacggcatcaaattacaaaattcaaggtatttttatcctcggtaatttgagagaatttc 15011961  T
Q  429 tatttaccccctgctatatcatcgat 454  Q
      ||||||| |||| |||||||||||    
T  15011960 ggtttaccctctgccatatcatcgat 15011935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 19377191 - 19377094
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatt 416  Q
    ||||||||||| | | || ||||||||||||||  ||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||    
T  19377191 ttgtttagattccaacccctgtaatttgaagatatttttattttggaccttcatggcgtcaaattacaaaatttaaggtactttcgccccttgtaatt 19377094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 27082594 - 27082728
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||  ||||| |||||||||||||| |||| ||| || |||  ||||||||||||| ||||||||||||| ||||| | |||||||    
T  27082594 ttgtttagatt-ccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttcgccccctgtaatttg 27082692  T
Q  419 agagaatttctatttaccccctgctatatcatcgat 454  Q
    ||| |||||   |||||||||||| |||| ||||||    
T  27082693 agataattttggtttaccccctgccatattatcgat 27082728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 27195707 - 27195573
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||  ||||| |||||||||||||| |||| ||| || |||  ||||||||||||| ||||||||||||| ||||| | |||||||    
T  27195707 ttgtttagatt-ccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttcgccccctgtaatttg 27195609  T
Q  419 agagaatttctatttaccccctgctatatcatcgat 454  Q
    ||| |||||   |||||||||||| |||| ||||||    
T  27195608 agataattttggtttaccccctgccatattatcgat 27195573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 25601798 - 25601906
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||||||||||||||||||| ||||  ||   |||||||||  ||||||||||||||||||| ||||||| ||||| | ||||||     
T  25601798 ttgtttagatt-ccaaccttgtaatttgaagattttttggcttaaaaccttcatgatatcaaattacaaaatttaatgtactttcgccccctgtaatttt 25601896  T
Q  419 agagaatttc 428  Q
    ||||||||||    
T  25601897 agagaatttc 25601906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 10394471 - 10394574
Alignment:
Q  323 ttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagag 422  Q
    ||||||||| ||| ||||||||||||||||||||| ||||| | ||||||  |||||||||| ||||||||||| ||||   ||| ||||||||||||||    
T  10394471 ttagatttc-aactttgtaatttgaagattctttggttttgtatcttcatagcatcaaattataaaatttaaggcacttccaccctttataatttgagag 10394569  T
Q  423 aattt 427  Q
    |||||    
T  10394570 aattt 10394574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 28696729 - 28696661
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactttt 403  Q
    ||||||||||| || |||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  28696729 ccttgtaattttaatattctttgattttggaccttcaagacatcaaattacaaaacttatggtactttt 28696661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 27485040 - 27484941
Alignment:
Q  340 taatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc 438  Q
    ||||||||||||| |||  |||||||| ||||||| ||| |||||| |||||||||| ||||||| |||  |||||||||||||||||||  ||||||||    
T  27485040 taatttgaagattttttttattttggatcttcatggcattaaattaaaaaatttaagatacttttaccctctataatttgagagaatttcagtttacccc 27484941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 14675581 - 14675681
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||       ||  |||||||||| ||||||||||||| | |||||||    
T  14675581 ttgttaagatttc-aacattgtaatttgaagattctttgattttggactttcatg-------atatcaaaatttaaagtacttttgccccctgtaatttg 14675672  T
Q  419 agagaattt 427  Q
    |||||||||    
T  14675673 agagaattt 14675681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 22859342 - 22859404
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||||| |||| ||||||| ||||||| | |||| |||||||||||| ||||||||    
T  22859342 taatttgaagattttttggttttggatcttcatggcttcaagttacaaaatttatggtacttt 22859404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 2936391 - 2936339
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| |||||||||    
T  2936391 ttgtttagatttc-aaccatgtaatttgaagattctttggttttcgaccttcat 2936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 18268329 - 18268280
Alignment:
Q  405 ccccttataatttgagagaatttctatttaccccctgctatatcatcgat 454  Q
    ||||| |||||||||| |||||||  ||||||||||||||||||||||||    
T  18268329 cccctgataatttgagcgaatttcggtttaccccctgctatatcatcgat 18268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 26876617 - 26876658
Alignment:
Q  400 ttttgccccttataatttgagagaatttctatttaccccctg 441  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  26876617 ttttgccccttataatttgagaaaatttcaatttaccccctg 26876658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 2300901 - 2300938
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2300901 ccttgtaatttgaagattc-ttgattttggaccttcatg 2300938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 8391027 - 8391079
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  8391027 ttgtttag-tttccatccttgtaatttgtagatt-tttgattttggaccttcatg 8391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 17051895 - 17051933
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  17051895 ccttgtaatttgaatattttttgattttggaccttcatg 17051933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 21022469 - 21022507
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21022469 ccttgtaatttgaagattttttggttttggaccttcatg 21022507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 546
Target Start/End: Original strand, 25583989 - 25584043
Alignment:
Q  492 ggatcaggctcttctaaagtgagcgattcactgtagagtatgaagtgagtaatat 546  Q
    ||||| |||||||||||||||||| | ||||| |||||| | |||||||||||||    
T  25583989 ggatccggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatat 25584043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 27484820 - 27484872
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  27484820 ttgtttagatttc-aaccatgtaatttgaagatt-tttgattttggatcttcatg 27484872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 337 - 419
Target Start/End: Complemental strand, 28543400 - 28543319
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 419  Q
    ||||||||||||  | ||||| ||||||||||  | | |||||||||||||||||||  ||||||||| || |||||||||||    
T  28543400 ttgtaatttgaaagtcctttggttttggacctgaa-gacatcaaattacaaaatttatagtacttttgtcctttataatttga 28543319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 35158262 - 35158299
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35158262 ccttgtaatttgaagatt-tttgattttggaccttcatg 35158299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 15011865 - 15011917
Alignment:
Q  320 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| |||| ||||    
T  15011865 tgtttagatttc-aaccctgtaatttgaagattctttggttttgaacctgcatg 15011917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 25898713 - 25898629
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttg 404  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||  |||   |||  |||||||| |||| |||||| ||||||||    
T  25898713 ttgtttagatttt-aaccttgtaatttgaagattcttcgattttaaacccatatgatatcaaatttcaaactttaagatacttttg 25898629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 323 - 478
Target Start/End: Original strand, 13555668 - 13555823
Alignment:
Q  323 ttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 421  Q
    ||||||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  13555668 ttagatttc-aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgaga 13555766  T
Q  422 gaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    |||||||  |||||||||| | |||||||| ||||||| ||||||||||| ||||||    
T  13555767 gaatttcggtttaccccctaccatatcatcaatatttcggtttaccccctaccatat 13555823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 5283900 - 5283732
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||| | ||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||    
T  5283900 ttgtttagatt-ccaatcctgtaatttgaagattttttgattttgaaccttcatggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttg 5283802  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    |  |||||||  |||||||||||| ||||||||||||||||  ||||||| || |||||| || ||||||    
T  5283801 aaggaatttcggtttaccccctgcaatatcatcgatatttcgatttaccctctaccatatcatcgatttt 5283732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 8810178 - 8810010
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | |||||||    
T  8810178 ttgttaagatttc-aaccttgtaatttgaagatttttttattttggaccttcatgacatcaaattataaaatttaaggtactttcgtcccgtgtaatttg 8810080  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    ||| ||||||  ||||||||||   || ||||||||||||||| |||||||||  ||||| |||||||||    
T  8810079 agaaaatttcggtttaccccctatcatgtcatcgatatttcaggttaccccctgtcatatcattgatttt 8810010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 329 - 468
Target Start/End: Complemental strand, 42161507 - 42161367
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||| | ||||||||||||||  ||| |||||||||||| | | |||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  42161507 ttccaatcctgtaatttgaagatcttttaattttggaccttgaaggcatcaaattacaaaatttaaggtactttcgctccttgtaatttgagagaatttc 42161408  T
Q  429 tatttaccc-cctgctatatcatcgatatttcagtttaccc 468  Q
     |||||||| ||||| |||||||||||||||||||||||||    
T  42161407 gatttaccctcctgccatatcatcgatatttcagtttaccc 42161367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 319 - 451
Target Start/End: Original strand, 49277727 - 49277858
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| ||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||  | |||||||    
T  49277727 ttgtttagatt-ccaaccgtgtaatttgaaaattatttggttttggaccttcatggcatcaaattacaaaatttaaggtacttttgccctctgtaatttg 49277825  T
Q  419 agagaatttctatttaccccctgctatatcatc 451  Q
     ||||||||| ||||||||||||| ||||||||    
T  49277826 cgagaatttcaatttaccccctgcgatatcatc 49277858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 49533319 - 49533201
Alignment:
Q  333 aaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatt 432  Q
    |||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||    
T  49533319 aaccttataatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaacgtatttttgccccttataatttgagagaatttcgatt 49533220  T
Q  433 taccccctgctatatcatc 451  Q
    || || || ||||||||||    
T  49533219 tatcctctcctatatcatc 49533201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 319 - 428
Target Start/End: Original strand, 16875937 - 16876045
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| ||| | |||||||    
T  16875937 ttgtttagattac-aaccttgtagtttgaagattctttgattttcgacctttatggcatcaaattacaaaatttaaggtatttttgtcccctgtaatttg 16876035  T
Q  419 agagaatttc 428  Q
    ||||||||||    
T  16876036 agagaatttc 16876045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 9780392 - 9780528
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||   ||| | |||||||    
T  9780392 ttgtttagatt-ccaaccctgtaatttgaagattctttgattttcgacctacatggcatcaaattaaaaaatttaaggtactttcatcccctgtaatttg 9780490  T
Q  419 agagaatttctatttacccc--ctgctatatcatcgat 454  Q
    ||| ||||||  ||||||||  |||| |||||||||||    
T  9780491 agataatttcggtttaccccttctgccatatcatcgat 9780528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 16734350 - 16734243
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||| || || | |||||||    
T  16734350 ttgtttagatttc-aacct-gtaatttgaagattctttgattttagaccttcatggcataaaattacaaaatttaaggtattttcgcaccctgtaatttg 16734253  T
Q  419 agagaatttc 428  Q
    ||||||||||    
T  16734252 agagaatttc 16734243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 8678889 - 8678989
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 417  Q
    ||||||||||| | |||||||||||||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||    
T  8678889 ttgtttagatt-caaaccttgtaatttgaagattttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgcctcttgtaattt 8678987  T
Q  418 ga 419  Q
    ||    
T  8678988 ga 8678989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 25786388 - 25786326
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  25786388 taatttgaagattctttgattttgaaccttcatggcatcaaattacaaattttaaggtacttt 25786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 21744998 - 21744891
Alignment:
Q  320 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 419  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||||  |||||| | | |||||||||||||| |||| |||| ||  ||| ||||||||    
T  21744998 tgtttagatt-ccaaccatgtaatttgaatattctttggttttggattttcatgacgtgaaattacaaaattttaggtgctttcgcttcttgtaatttga 21744900  T
Q  420 gagaatttc 428  Q
    |||||||||    
T  21744899 gagaatttc 21744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 29172618 - 29172681
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtac 399  Q
    ||||||||||| ||||| ||| |||||||||||| ||| |||||| || |||||||||||||||    
T  29172618 cttgtaatttggagatttttttattttggaccttaatggcatcaagtttcaaaatttaaggtac 29172681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 16589274 - 16589236
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  16589274 ccttgtaatttgaagattttttgattttggaccttcatg 16589236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 18509226 - 18509185
Alignment:
Q  342 atttgaagattctttgattttggaccttcatgtcatcaaatt 383  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  18509226 atttgaagattctttgattttggatcttcatgacatcaaatt 18509185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 29172797 - 29172756
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttc 370  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  29172797 ttccaaccttgtaatttgaagattctttggttttgaaccttc 29172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 49277931 - 49277880
Alignment:
Q  320 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||    
T  49277931 tgtttagatt-ccaaccttgtaatttgaagattatttggttttgaaccttcat 49277880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 3652567 - 3652529
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  3652567 ccttgtaatttgaagattttttggttttggaccttcatg 3652529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 9780599 - 9780546
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| | |||| ||||||||||||||| |||| |||||||||||||||    
T  9780599 ttgtttagattac-aaccatgtaatttgaagattatttggttttggaccttcatg 9780546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 27626963 - 27626925
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  27626963 ccttgtaatttgaagattttttgcttttggaccttcatg 27626925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 29104457 - 29104419
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29104457 ccttgtaatttgaagattttttggttttggaccttcatg 29104419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 29700563 - 29700616
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||||||    
T  29700563 ttgtttagatt-ccaaccctgttatttgaagattctttaatttttgaccttcatg 29700616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 36395414 - 36395452
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  36395414 ccttgtaatttgaagattttttggttttggaccttcatg 36395452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 44005712 - 44005757
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggttt 301  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||    
T  44005712 gggttaatgtatgttta-tctccagtaatattagcgattttcggttt 44005757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 49166940 - 49166902
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  49166940 ccttgtaatttgaagattttttggttttggaccttcatg 49166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 49533131 - 49533180
Alignment:
Q  322 tttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  49533131 tttagatttc-aaccttgtaatttgaagattttttcattttggactttcat 49533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 23091928 - 23091876
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| ||||||||    
T  23091928 ttgtttagatt-ccaaccttgtaatttgaagattttttagttttgaaccttcat 23091876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 37589653 - 37589620
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgatttt 362  Q
    |||||||| |||||||||||||||||||||||||    
T  37589653 ttccaaccatgtaatttgaagattctttgatttt 37589620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 322 - 467
Target Start/End: Complemental strand, 82444 - 82300
Alignment:
Q  322 tttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 421  Q
    |||||||||| | |||| |||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  82444 tttagatttcaaccctt-taatttaaagattgtttgattttggaccttcatgatatcaaattacaaaatttaaggtactttcgccccatgtaatttgaga 82346  T
Q  422 gaatttctatttaccccctgctatatcatcgatatttcagtttacc 467  Q
    |||||||  ||||||||||||||||||||||||||||  |||||||    
T  82345 gaatttcggtttaccccctgctatatcatcgatattttggtttacc 82300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 319 - 467
Target Start/End: Complemental strand, 9235587 - 9235440
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  9235587 ttgtttagatttc-aaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttg 9235489  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttacc 467  Q
    | |||||||   |||| ||| ||  |||||||||||||||| |||||||    
T  9235488 aaagaattttggtttaacccttgacatatcatcgatatttcggtttacc 9235440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 255 - 468
Target Start/End: Complemental strand, 23289212 - 23288999
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 354  Q
    ||||||||||||||||   | || |||||||||  |||||||||||||||||||||        ||||||||||| |||||| ||||||||||||||| |    
T  23289212 gggttaatatatgtttg--cccctgtaatattagtgattttcggtttatcccctgtaaaaaaaattgtttagatt-ccaaccctgtaatttgaagatttt 23289116  T
Q  355 ttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta---ccccctgctatatcatc 451  Q
    || | |||||||||||||| |||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||   |||||||  ||||||||    
T  23289115 ttaactttggaccttcatggcatcaaattacaaaatttaaggtactttcgtcccctgtaatttgagagaatttctgtttaatcccccctgtcatatcatc 23289016  T
Q  452 gatatttcagtttaccc 468  Q
    |||||||| ||| ||||    
T  23289015 gatatttcggttcaccc 23288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 5600413 - 5600247
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||  | ||||||| |||||| |||||||||| |||||||||| ||||| ||||||||     
T  5600413 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttaaatcttcatggcatcaagttacaaaattgaaggtactttcgcccc-tataatttt 5600316  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    ||||||||||   || |||||||||||||||| |||| |||||||||||| || ||||||||| ||||||    
T  5600315 agagaatttcggatt-ccccctgctatatcattgatagttcagtttaccctctgccatattatcgatttt 5600247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 319 - 488
Target Start/End: Original strand, 5640207 - 5640373
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||  | ||||||| |||||| |||||||||| |||||||||| ||||| ||||||||     
T  5640207 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttaaatcttcatggcatcaagttacaaaattgaaggtactttcgcccc-tataatttt 5640304  T
Q  419 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    ||||||||||   || |||||||||||||||| |||| |||||||||||| || ||||||||| ||||||    
T  5640305 agagaatttcggatt-ccccctgctatatcattgatagttcagtttaccctctgccatattatcgatttt 5640373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 13373258 - 13373373
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 437  Q
    |||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |  | || ||    
T  13373258 tgtaatttgaagattctttggttttgaaccttcctggcatcaaattacaaaatttaaggtatttttgccccttgtaatttgagagaattccggtgta-cc 13373356  T
Q  438 cctgctatatcatcgat 454  Q
    |||||||||||||||||    
T  13373357 cctgctatatcatcgat 13373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 14698293 - 14698164
Alignment:
Q  358 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 457  Q
    ||||| |||||||||| |||||| ||| ||||||||||||||||||| || || |||||||||| ||||||  ||| |||||||| ||||||||||||||    
T  14698293 attttagaccttcatggcatcaa-ttataaaatttaaggtacttttgtcctttgtaatttgagaaaatttcagtttgccccctgccatatcatcgatatt 14698195  T
Q  458 tcagtttaccccctcccatattattgatttt 488  Q
    |||| ||||||| | |||||| |||||||||    
T  14698194 tcaggttaccccttgccatatcattgatttt 14698164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 337 - 451
Target Start/End: Original strand, 24375771 - 24375884
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 436  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||| | ||||| |||||||||  ||||||  ||||||    
T  24375771 ttgtaatttgaagattttttg-ttttggaccttcatggcatcaaattacaaaatttatggtactttcgtcccttgtaatttgagcaaatttcagtttacc 24375869  T
Q  437 ccctgctatatcatc 451  Q
    |||||| ||||||||    
T  24375870 ccctgccatatcatc 24375884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 347 - 471
Target Start/End: Complemental strand, 24529011 - 24528887
Alignment:
Q  347 aagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctata 446  Q
    |||||| ||| |||||| |||||| || |||||||||| ||||||||| ||| ||| |||| || |||||| ||||||| ||  |||||||||| | |||    
T  24529011 aagatttttttattttgtaccttcgtggcatcaaattataaaatttaaagtattttcgccctttgtaattttagagaatctcggtttaccccctaccata 24528912  T
Q  447 tcatcgatatttcagtttaccccct 471  Q
    |||||||||||||||||||||||||    
T  24528911 tcatcgatatttcagtttaccccct 24528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 332 - 451
Target Start/End: Complemental strand, 23245779 - 23245660
Alignment:
Q  332 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctat 431  Q
    ||||| ||||||||||||||| |||||||||||||||  ||| ||| |||||  ||||||||||||||||| ||||| | |||||||||| ||||||  |    
T  23245779 caaccctgtaatttgaagattttttgattttggacctatatggcattaaattttaaaatttaaggtactttcgccccatgtaatttgagataatttcgtt 23245680  T
Q  432 ttaccccctgctatatcatc 451  Q
    ||||||| ||| ||||||||    
T  23245679 ttaccccttgccatatcatc 23245660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 329 - 404
Target Start/End: Original strand, 11908474 - 11908549
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttg 404  Q
    |||||||| ||||||||||||||||| || ||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  11908474 ttccaaccatgtaatttgaagattctatggtttaggaccttcatggcatcaaatttcaaaatttaaggtacttttg 11908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 12719159 - 12719249
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgag 420  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| | | |||||| ||||||| |||||||||    
T  12719159 ttccatccttgtaatttgaa-attctttggttttggaccttcatgacatcaaatttcaaaattgatgatactttcgccccttgtaatttgag 12719249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 8980803 - 8980741
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtac 399  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  8980803 ttgtaatttgaagattctttagttttggaccttcatgacatcaaattacaaaatttatggtac 8980741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 28786366 - 28786447
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactt 401  Q
    ||||||||||| |||||| ||||| | ||||||| |||||||||||||||||||| |||||| || |||| ||||||||||||    
T  28786366 ttgtttagatt-ccaaccctgtaactagaagattatttgattttggaccttcatggcatcaattttcaaactttaaggtactt 28786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 13980076 - 13980023
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  13980076 ttgtttagatt-ctaaccctgtaatttgaagattctttgattttggaccttcatg 13980023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 10761717 - 10761679
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10761717 ccttgtaatttgaagattttttgattttggaccttcatg 10761679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 25653784 - 25653822
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25653784 ccttgtaatttgaagattttttgattttggaccttcatg 25653822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 28786551 - 28786519
Alignment:
Q  341 aatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||||||||||||||||||    
T  28786551 aatttgaagattctttgattttggaccttcatg 28786519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 28999546 - 28999510
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28999546 cttgtaatttgaagattctttgatttgggaccttcat 28999510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 24754628 - 24754670
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgatttt 362  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  24754628 ttgtttagatt-ccaaccatgtaatttgaagattctttgatttt 24754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 9662273 - 9662311
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  9662273 ccttgtaatttgaagattttttggttttggaccttcatg 9662311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 11830471 - 11830433
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  11830471 ccttgtaatttgaagattttttggttttggaccttcatg 11830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 12478869 - 12478831
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  12478869 ccttgtaatttgaagattttttggttttggaccttcatg 12478831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 13558837 - 13558799
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13558837 ccttgtaatttgaagattttttggttttggaccttcatg 13558799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 32684641 - 32684679
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  32684641 ccttgtaatttgaagattttttggttttggaccttcatg 32684679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 34845363 - 34845401
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  34845363 ccttgtaatttgaagattttttggttttggaccttcatg 34845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 41509459 - 41509497
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  41509459 ccttgtaatttgaagattttttggttttggaccttcatg 41509497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 425
Target Start/End: Original strand, 11311297 - 11311390
Alignment:
Q  332 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaat 425  Q
    |||| |||||||||||||||| | |||||||| |  |||||| ||||  |||  ||||||||| ||| ||||| ||||| ||||||||| ||||    
T  11311297 caactttgtaatttgaagattatatgattttgaattttcatgacatcgtatttaaaaatttaacgtatttttgtcccttgtaatttgagggaat 11311390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 401
Target Start/End: Original strand, 25057020 - 25057085
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactt 401  Q
    |||||||||||||||||||||  ||||| | ||||||  ||||||||| |||||| |||| |||||    
T  25057020 cttgtaatttgaagattctttagttttgaatcttcatcacatcaaatttcaaaatgtaagatactt 25057085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 36637288 - 36637251
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  36637288 cttgtaatatgaagattttttgattttggaccttcatg 36637251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 340 - 488
Target Start/End: Original strand, 25059885 - 25060033
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 439  Q
    |||||| || ||| |||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||  |||||||||    
T  25059885 taatttaaatattttttgattttggaccttcaagacatcaaattacaaaatttaaggtattttcgccccttgtaatttgagagcatttcggtttaccccc 25059984  T
Q  440 tgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
    ||  |||||||||||||||||| ||||||||| |||||| |||||||||    
T  25059985 tgtcatatcatcgatatttcaggttaccccctgccatatcattgatttt 25060033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 319 - 471
Target Start/End: Complemental strand, 5469592 - 5469440
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| ||||||||||||||||||  || |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| | |||| ||    
T  5469592 ttgtttagatt-ccaaccttgtaatttgaattttttttgattttggaccttcatggcatcaaactacaaaatttaaggtatttttgccccctgtaatatg 5469494  T
Q  419 agagaatttctattta-ccccctgctatatcatcgatatttcagtttaccccct 471  Q
    ||||||||||  |||| |||||| ||||||||| ||||||||| |||| |||||    
T  5469493 agagaatttcggtttacccccctactatatcattgatatttcaatttatcccct 5469440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 13437117 - 13437010
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  13437117 ttgtttagatt-ccaaccgtgtaatttgatgattttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgccccttgtaatttg 13437019  T
Q  419 agagaattt 427  Q
    |||||||||    
T  13437018 agagaattt 13437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 33864321 - 33864186
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||| ||| | | ||||||     
T  33864321 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttt 33864223  T
Q  419 agagaatttctatttacccc-ctgctatatcatcgat 454  Q
     |||||||||  |||||||| |||| |||||||||||    
T  33864222 cgagaatttcggtttacccctctgcgatatcatcgat 33864186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 319 - 454
Target Start/End: Original strand, 33916601 - 33916736
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||| ||| | | ||||||     
T  33916601 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttt 33916699  T
Q  419 agagaatttctatttacccc-ctgctatatcatcgat 454  Q
     |||||||||  |||||||| |||| |||||||||||    
T  33916700 cgagaatttcggtttacccctctgcgatatcatcgat 33916736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 319 - 478
Target Start/End: Original strand, 17890132 - 17890290
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| |||||||| |||||| ||| |||||||| | ||||  |||||||||||||||||||||||||||  | || || |||||||    
T  17890132 ttgtttagatt-ccaaccctgtaatttaaagatttttt-attttggatcctcatagcatcaaattacaaaatttaaggtacttccgtccattgtaatttg 17890229  T
Q  419 agagaatttctatttacc-ccctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    ||||||||||  |||||| |  ||  |||||||||||||||||||||||||| | ||||||    
T  17890230 agagaatttcggtttacctctatgtcatatcatcgatatttcagtttaccccttgccatat 17890290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 7261587 - 7261487
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||  |||| | |||||||    
T  7261587 ttgtttagatt-ccaaccctgtaatttgaacattctttggttttggaccttcatgacatcaaatttcaaaattgaaggtactttgcccccctgtaatttg 7261489  T
Q  419 ag 420  Q
    ||    
T  7261488 ag 7261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 24023289 - 24023179
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 437  Q
    |||||||| |||||| |||| ||||||||||||| | |||||||||  ||||||||||||| ||||||||||| || |||||| ||||||| ||||| ||    
T  24023289 tgtaattt-aagattatttggttttggaccttcacgacatcaaatttgaaaatttaaggtatttttgccccttttattttgagcgaatttcgatttatcc 24023191  T
Q  438 cctgctatatca 449  Q
    ||| ||||||||    
T  24023190 cctactatatca 24023179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 319 - 454
Target Start/End: Complemental strand, 44078798 - 44078664
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| ||||||||||||||||||||| ||||  |||||||||||| |  ||| ||||| |||||||||||||||||||||||| ||||  |||    
T  44078798 ttgtttagatt-ccaaccttgtaatttgaagatccttttgttttggaccttcctaacataaaatttcaaaatttaaggtacttttgccccctatagattg 44078700  T
Q  419 agagaatttctatttaccccctgctatatcatcgat 454  Q
    ||  |||||   | |||||||||  |||||||||||    
T  44078699 agcaaattttggtataccccctgtaatatcatcgat 44078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 255 - 392
Target Start/End: Original strand, 22315145 - 22315282
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnn-ttgtttagatttccaaccttgtaatttgaagattc 353  Q
    ||||||||||||||||| || || ||||||||| ||||||  ||||||  ||||||         ||||||||||| |||||| |||||||||||||||     
T  22315145 gggttaatatatgtttactcccctgtaatattagcgatttctggtttactccctgtaaaaaaaaattgtttagatt-ccaaccctgtaatttgaagattt 22315243  T
Q  354 tttgattttggaccttcatgtcatcaaattacaaaattt 392  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  22315244 tttgattttggaccttcatggcatcatattacaaaattt 22315282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 5883089 - 5882997
Alignment:
Q  327 atttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 419  Q
    |||| |||||||||||||| |||||| ||||  |||| ||||||||| |||||||||  ||||||||||||||||| |||||| |||||||||    
T  5883089 attttcaaccttgtaattttaagattatttggctttgtaccttcatgacatcaaattttaaaatttaaggtactttcgcccctcataatttga 5882997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 339 - 451
Target Start/End: Complemental strand, 44228524 - 44228413
Alignment:
Q  339 gtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc 438  Q
    |||||||||||||||||||  ||||||||||| || ||||||||| |||||||||||||||||| ||||| | |||||| ||  ||||||  ||||||||    
T  44228524 gtaatttgaagattctttgggtttggaccttcgtggcatcaaatttcaaaatttaaggtactttcgcccc-tgtaatttaagcaaatttcggtttacccc 44228426  T
Q  439 ctgctatatcatc 451  Q
    |||  ||||||||    
T  44228425 ctggcatatcatc 44228413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 15654059 - 15654132
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||| |||||||||||| |||||||||||||| ||||||  | ||||||||| ||||| ||||||||||||    
T  15654059 ttccaactttgtaatttgaaaattctttgattttgaaccttctggacatcaaatttcaaaacttaaggtacttt 15654132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 16639555 - 16639659
Alignment:
Q  337 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccc-ttataatttgagagaatttctatttac 435  Q
    ||||||||| ||||||||||| |||| |||||| |||   ||||||||||||||||| |||||||| ||||| || |||||||||| |||||   |||||    
T  16639555 ttgtaatttaaagattctttggtttttgacctttatgatgtcaaattacaaaatttatggtactttcgcccctttgtaatttgagaaaattttggtttac 16639654  T
Q  436 cccct 440  Q
    |||||    
T  16639655 cccct 16639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 22151971 - 22152087
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 437  Q
    ||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||| |||||||  ||||  | |||||| ||  ||||||  |||||||    
T  22151971 tgtaatttgaagatttttttgttttggaccttcatgacatcaaattgcaaaatttatggtacttacgcccactgtaatttaagcaaatttcagtttaccc 22152070  T
Q  438 cctgctatatcatcgat 454  Q
     || | |||||||||||    
T  22152071 tctaccatatcatcgat 22152087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 23621217 - 23621280
Alignment:
Q  346 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 409  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||| ||||||    
T  23621217 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtactttcgcccct 23621280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 23737996 - 23738059
Alignment:
Q  346 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 409  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||| ||||||    
T  23737996 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtactttcgcccct 23738059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 23652563 - 23652619
Alignment:
Q  346 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| |||||||    
T  23652563 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtacttt 23652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 9240531 - 9240580
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggacctt 369  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  9240531 ttgtttagatttg-aaccctgtaatttgaagattctttgattttggacctt 9240580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 19967858 - 19967820
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19967858 ccttgtaatttgaagattttttgattttggaccttcatg 19967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 9240736 - 9240654
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||| | |||| ||||| ||||||||||||   ||||  ||||||||| ||||||||||  ||||||||||||||||    
T  9240736 ttgtttagatt-caaaccctgtaacttgaagattcttcagttttaaaccttcatggcatcaaattatgaaatttaaggtacttt 9240654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 21771019 - 21770981
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21771019 ccttgtaatttgaagattttttggttttggaccttcatg 21770981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 413 - 491
Target Start/End: Original strand, 22315288 - 22315365
Alignment:
Q  413 aatttgagagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttttta 491  Q
    ||||||||| ||||||  |||||||||| | ||||||||||||||||||  || |||||  ||||| ||||||||||||    
T  22315288 aatttgagaaaatttcagtttacccccttccatatcatcgatatttcagggta-cccctgtcatatcattgatttttta 22315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 23161905 - 23161942
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23161905 ccttgtaatttgaagatt-tttgattttggaccttcatg 23161942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 26191026 - 26190988
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  26191026 ccttataatttgaagattttttgattttggaccttcatg 26190988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 27666212 - 27666174
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  27666212 ccttgtaatttgaagattttttggttttggaccttcatg 27666174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 33864115 - 33864168
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| | |||||||    
T  33864115 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttgaatcttcatg 33864168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 33916807 - 33916754
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| | |||||||    
T  33916807 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttgaatcttcatg 33916754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 44228339 - 44228392
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||| | |||| |||||||| ||||||||||| |||||||||||||||    
T  44228339 ttgtttagattac-aaccctgtaatttaaagattctttggttttggaccttcatg 44228392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 6667399 - 6667448
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatc 378  Q
    |||||||||||||||||||||||| ||| ||||| |||| | ||||||||    
T  6667399 ttccaaccttgtaatttgaagattatttcattttagaccctgatgtcatc 6667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 22387224 - 22387261
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  22387224 cttgtaatttgaagattttttggttttggaccttcatg 22387261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 329 - 488
Target Start/End: Complemental strand, 9044690 - 9044531
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||| ||||||  || |   ||||||||||||||||     
T  9044690 ttccaaccttgtaatttgaagattatttgattttggaccttcatggcatcaaattatataatttaagatactttcacctcccgtaatttgagagaatttt 9044591  T
Q  429 tatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 488  Q
      |||||||||||| |||||||||||||||||||||||||| | |||||| || ||||||    
T  9044590 ggtttaccccctgccatatcatcgatatttcagtttaccccttgccatatcatcgatttt 9044531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 329 - 471
Target Start/End: Complemental strand, 25167144 - 25167002
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||||  ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||    
T  25167144 ttccaactgtgtaatttgaagattatttgattttggatcttcatggcatcaaattacaaaatttaaggtactttcgtcccttgtaatttgagagaatttc 25167045  T
Q  429 tatttaccccctgctatatcatcgatatttcagtttaccccct 471  Q
      |||||| || || |||  |||||||||||||||||||||||    
T  25167044 ggtttacctcccgccataggatcgatatttcagtttaccccct 25167002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 338 - 471
Target Start/End: Complemental strand, 9662968 - 9662835
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 437  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||    
T  9662968 tgtaatttgaagattttttgattttgaaccttcatgacatcaaattacaaaatttaaggtacttttgccccctgtaatttgagagaatttcagtttaccc 9662869  T
Q  438 cctgctatatcatcgatatttcagtttaccccct 471  Q
    | ||  ||||||| |||||||  |||||||||||    
T  9662868 cttgtcatatcattgatattttggtttaccccct 9662835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 319 - 450
Target Start/End: Original strand, 3816552 - 3816681
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 418  Q
    ||||||||||| |||||||  |||||| ||||||||||| ||||| | ||||||| |||||||||| ||||||||||||||||| ||||| | |||||||    
T  3816552 ttgtttagatt-ccaaccta-taatttaaagattctttggttttgaatcttcatggcatcaaattataaaatttaaggtactttcgccccctgtaatttg 3816649  T
Q  419 agagaatttctatttaccccctgctatatcat 450  Q
    ||| |||||   |||||| |||||||||||||    
T  3816650 agaaaattttggtttacctcctgctatatcat 3816681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 341 - 417
Target Start/End: Complemental strand, 20757684 - 20757608
Alignment:
Q  341 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 417  Q
    |||||||||||| |||| |||||| | |||||| ||||||||||||||| |||||||||||| ||||||| ||||||    
T  20757684 aatttgaagattttttggttttggtcgttcatgacatcaaattacaaaacttaaggtactttcgccccttgtaattt 20757608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 33198608 - 33198670
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||| |||||    
T  33198608 taatttgaagattctttggttttagacattcatggcatcaaattacaaaatttaaggcacttt 33198670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 373
Target Start/End: Complemental strand, 3816820 - 3816703
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 354  Q
    ||||||||| |||||||  |||  ||||||||| ||||||  |||||| |||||||        ||||||||||||| |||| |||||||||||||||||    
T  3816820 gggttaatacatgtttatcctcatgtaatattagcgatttctggtttaccccctgtaaaaaaaattgtttagatttc-aaccctgtaatttgaagattct 3816722  T
Q  355 ttgattttggaccttcatg 373  Q
    ||| |||| ||||||||||    
T  3816721 ttggtttttgaccttcatg 3816703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 6759742 - 6759824
Alignment:
Q  338 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgag 420  Q
    |||||||||| ||||||||  |||||||  ||||||  |||||||| ||||||||||||||||||  |||| | |||||||||    
T  6759742 tgtaatttgatgattctttagttttggattttcatgagatcaaatttcaaaatttaaggtactttcaccccctttaatttgag 6759824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 33200067 - 33200018
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggacctt 369  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  33200067 ttgtttagattac-aaccctgtaatttgaagattctttgattttggacctt 33200018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 334912 - 334993
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 402  Q
    ||||||||||||  |||||||||||||||||||| |||  ||| |||| |||||| ||| |||||| ||||||||| |||||||    
T  334912 ttgtttagatttt-aaccttgtaatttgaagatt-tttagtttaggacattcatgacattaaattataaaatttaaagtacttt 334993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 1227972 - 1227934
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  1227972 ccttgtaatttgaagattttttggttttggaccttcatg 1227934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 2270780 - 2270742
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  2270780 ccttgtaatttgaagattttttggttttggaccttcatg 2270742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 18274403 - 18274361
Alignment:
Q  330 tccaaccttgtaatttgaagattctttgattttggaccttcat 372  Q
    ||||||| |||||||||||||||||||||||||| || |||||    
T  18274403 tccaaccctgtaatttgaagattctttgattttgaactttcat 18274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 21544426 - 21544388
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21544426 ccttgtaatttgaagattttttggttttggaccttcatg 21544388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 29942605 - 29942642
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  29942605 ccttgtaatttgaagatt-tttgattttggaccttcatg 29942642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 686587 - 686551
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||||||||||| |||||||||||||||||||    
T  686587 ccttgtaatttgaagatt-tttgattttggaccttcat 686551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 16119955 - 16119918
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  16119955 cttgtaatttgaagattttttggttttggaccttcatg 16119918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Original strand, 22495780 - 22495817
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcat 372  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  22495780 ccttgtaatttgaagattttttggttttggaccttcat 22495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 31174052 - 31174089
Alignment:
Q  336 cttgtaatttgaagattctttgattttggaccttcatg 373  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  31174052 cttgtaatttgaagattttttgattttagaccttcatg 31174089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 340 - 455
Target Start/End: Complemental strand, 25960 - 25844
Alignment:
Q  340 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc-cc 438  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||| ||    
T  25960 taatttgaaggttttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagaatttcggtttaccacc 25861  T
Q  439 ctgctatatcatcgata 455  Q
    |||  ||||||||||||    
T  25860 ctgtcatatcatcgata 25844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 255 - 417
Target Start/End: Complemental strand, 13447 - 13286
Alignment:
Q  255 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 354  Q
    |||||||||||||||||  | || ||||||||| ||||||| |||||| |||||||        ||||||||||| |||||||||||||||||||||| |    
T  13447 gggttaatatatgtttaccc-cctgtaatattagcgatttttggtttaccccctgtaaaaaaatttgtttagatt-ccaaccttgtaatttgaagatttt 13350  T
Q  355 tt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 417  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||    
T  13349 tttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgccccatgtaattt 13286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 335 - 409
Target Start/End: Complemental strand, 306762 - 306688
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 409  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  306762 ccttgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttcgcccct 306688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 341 - 428
Target Start/End: Original strand, 23194 - 23281
Alignment:
Q  341 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 428  Q
    |||||||||| | ||||||||| |||||||||| |||||||||||||||||||| ||| ||  ||||  |||||||||||||||||||    
T  23194 aatttgaagactttttgattttagaccttcatggcatcaaattacaaaatttaacgtatttccgccctctataatttgagagaatttc 23281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 34509 - 34564
Alignment:
Q  329 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaatta 384  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||    
T  34509 ttccaaccttgtaattttaagattttttgatcttggaccttcatggcatcaaatta 34564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 488
Target Start/End: Original strand, 34884 - 34993
Alignment:
Q  380 aattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc-ctgctatatcatcgatatttcagtttaccccctcccatat 478  Q
    ||||| |||||||||||||||||  |||| | ||||||||||| ||||   |||||||| |||  ||||||| ||||||||||||||||||||  |||||    
T  34884 aattaaaaaatttaaggtactttctccccatgtaatttgagagtattttggtttacccctctgtcatatcatagatatttcagtttaccccctatcatat 34983  T
Q  479 tattgatttt 488  Q
     || ||||||    
T  34984 catcgatttt 34993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1462 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 375 - 337
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  375 ccttgtaatttgaagattttttggttttggaccttcatg 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 63111 - 63149
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  63111 ccttgtaatttgaagattttttggttttggaccttcatg 63149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 145201 - 145149
Alignment:
Q  319 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||    
T  145201 ttgtttag-tttccatccttataatttgaagatt-tttgattttggaccttcatg 145149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 432475 - 432513
Alignment:
Q  335 ccttgtaatttgaagattctttgattttggaccttcatg 373  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  432475 ccttgtaatttgaagattttttggttttggaccttcatg 432513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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