View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_16 (Length: 388)

Name: NF1153_low_16
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_16
NF1153_low_16
[»] chr3 (6 HSPs)
chr3 (89-282)||(27062809-27063002)
chr3 (89-287)||(27069877-27070075)
chr3 (89-290)||(27085930-27086131)
chr3 (89-287)||(27041455-27041653)
chr3 (90-290)||(27098596-27098796)
chr3 (90-280)||(27105605-27105795)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 27063002 - 27062809
Alignment:
Q  89 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27063002 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 27062903  T
Q  189 gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaat 282  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27062902 gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaaat 27062809  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 287
Target Start/End: Complemental strand, 27070075 - 27069877
Alignment:
Q  89 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 188  Q
    |||||||||||||||||||||  ||||||||| ||||| ||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  27070075 aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt 27069976  T
Q  189 gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaa 287  Q
    ||||||| ||||||||  ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  27069975 gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaa 27069877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 290
Target Start/End: Complemental strand, 27086131 - 27085930
Alignment:
Q  89 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 188  Q
    |||||||||||||||||||||| ||||||||| ||||| ||| |||| | ||||||||||| ||||||||| ||||||||||| || |||||||||||||    
T  27086131 aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt 27086032  T
Q  189 gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaat 288  Q
     ||||||  |||||||   || ||||| ||  ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27086031 aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat 27085932  T
Q  289 at 290  Q
    ||    
T  27085931 at 27085930  T

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Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 89 - 287
Target Start/End: Complemental strand, 27041653 - 27041455
Alignment:
Q  89 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 188  Q
    |||||||||||||||||||||| |||||| || ||||| ||| | |||| ||||||||||| ||||||||| ||||||||||| || |||||||||||||    
T  27041653 aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt 27041554  T
Q  189 gaatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaa 287  Q
     ||||||  |||||||   || ||||| ||  ||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||| ||||||||||    
T  27041553 aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaa 27041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 27098796 - 27098596
Alignment:
Q  90 acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg 189  Q
    |||||||||||||||||| |  |   ||||| ||||||||  ||||||||||||| || |||| ||| |||  |||||||||||||||||||| ||| ||    
T  27098796 acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27098697  T
Q  190 aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaaatgaaaata 289  Q
    |||||||  || |||  | |||| |||||  ||||||||||  | || || |||| ||||||||| ||||||||||| |||||||| |||| || |||||    
T  27098696 aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata 27098597  T
Q  290 t 290  Q
    |    
T  27098596 t 27098596  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 280
Target Start/End: Complemental strand, 27105795 - 27105605
Alignment:
Q  90 acctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgtg 189  Q
    |||||||||||||||||| |  |   ||||| ||||||||| ||||||||||||| || |||| ||| |||  |||||||||||||||||||| ||| ||    
T  27105795 acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27105696  T
Q  190 aatcaacctaatactgaaattattaagcataattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaatgaaa 280  Q
    ||||||   || |||  | |||| ||| |  |||||||||| || ||||| |||| | ||||||  |||||||||||||||||||| ||||    
T  27105695 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa 27105605  T

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