View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_19 (Length: 383)
Name: NF1153_low_19
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 29 - 268
Target Start/End: Complemental strand, 48551526 - 48551286
Alignment:
| Q |
29 |
aacttgatcacggtttaggcttttaagaatggaaacaataatttgtttggnnnnnnnnntcttaagaatggaaattgtgtaattttttt-ccctcnnnnn |
127 |
Q |
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| T |
48551526 |
aacttgatcacggtttaggcttttaagaatggaaacaataatttgtttggaaaaataaatcttaaaaatggaaattgtgtaattttttttccctaaaaaa |
48551427 |
T |
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| Q |
128 |
nnnnnnnnnnnnnnnnncaagaaaccttgaacgtgactcatcggtgtatccagagggggcatgctaaccagttttttgttactttcttttacccaatttt |
227 |
Q |
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| T |
48551426 |
aaaaacaaagaaaaaaacaagaaaccttgaacgtgactcatcggtgtatccagatggggcatgctaactagttttttgttactttcttttacccaatttt |
48551327 |
T |
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| Q |
228 |
gctgttaaagtagggcatgcattatttaataagcaaaagca |
268 |
Q |
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| T |
48551326 |
gcagttaaaatagggcatgcatgatttaataagcaaaagca |
48551286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 48580854 - 48580718
Alignment:
| Q |
145 |
caagaaaccttgaacgtgactcatcggtgtatccagagggggcatgctaaccagttttttgttactttcttttacccaattttgctgttaaagtagggca |
244 |
Q |
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| T |
48580854 |
caagaaaccttgaacgtgattcatcagtgtatccagagggct-atgctagctagttttttgttgctttcctttacctaattttgctgttaaagtagggca |
48580756 |
T |
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| Q |
245 |
tgcattatttaataagcaaaagcattattattaagttg |
282 |
Q |
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| T |
48580755 |
tgcatgatttaatcaccaaaagcattattattaagttg |
48580718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 48580941 - 48580893
Alignment:
| Q |
30 |
acttgatcacggtttaggcttttaagaatggaaacaataatttgtttgg |
78 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
48580941 |
acttgatcacggtttaggctttaaagaatggaaacaataatttgcttgg |
48580893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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