View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_23 (Length: 363)
Name: NF1153_low_23
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 45073296 - 45073134
Alignment:
| Q |
192 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
291 |
Q |
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| T |
45073296 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattattccaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
45073197 |
T |
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| Q |
292 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtattat |
354 |
Q |
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| T |
45073196 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtattat |
45073134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 45073409 - 45073323
Alignment:
| Q |
104 |
tctgttctgtttgctggtccattgactaccacctccattgactactgccattactcgtggttctccttttcgtttatttgtttcctt |
190 |
Q |
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| T |
45073409 |
tctgttctgtttgctggtccattgactaccacctccattgactactgccattactcgtggttctcctttttgtttatttgtttcctt |
45073323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45073488 - 45073406
Alignment:
| Q |
1 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctg |
83 |
Q |
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| T |
45073488 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctg |
45073406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 8880347 - 8880206
Alignment:
| Q |
1 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaa |
100 |
Q |
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| T |
8880347 |
ctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatctcagactattgattctgaaagtttaagtgtccaa |
8880248 |
T |
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| Q |
101 |
aactctgttctgtttgctggtccattgactaccacctccatt |
142 |
Q |
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| T |
8880247 |
aactccgttctgttagctggtccattgactaccacctccatt |
8880206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 8880060 - 8879949
Alignment:
| Q |
192 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
291 |
Q |
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| T |
8880060 |
tcgatatataattagtattccagttgaggtaagtaaagtccgacaaattattacaatcaaggatcaaactcatattctaccaaataatttaagcttaact |
8879961 |
T |
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| Q |
292 |
gaagtgtattaa |
303 |
Q |
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| T |
8879960 |
gaagtgtattaa |
8879949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 8884140 - 8884006
Alignment:
| Q |
8 |
ggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaaaactctg |
107 |
Q |
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| T |
8884140 |
ggtttatttccattgctttcgagcggactactgccattacttacggttgaagaaatatctcagactattgactctgaaagtttgactgtccaaaactctg |
8884041 |
T |
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| Q |
108 |
ttctgtttgctggtccattgactaccacctccatt |
142 |
Q |
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| T |
8884040 |
ttctgtttgctggtccattgactaccacctccatt |
8884006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 8883870 - 8883820
Alignment:
| Q |
214 |
attgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcat |
264 |
Q |
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||||| |||||| ||||| || ||| ||||||||||||||||||||||||| |
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| T |
8883870 |
attgacgtaagtcaagtctgataaactatttcaatcaaggatcgaactcat |
8883820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 8880154 - 8880122
Alignment:
| Q |
158 |
tcgtggttctccttttcgtttatttgtttcctt |
190 |
Q |
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| T |
8880154 |
tcgtggttctccttttcgtttatttatttcctt |
8880122 |
T |
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