View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_24 (Length: 363)

Name: NF1153_low_24
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_24
NF1153_low_24
[»] chr8 (5 HSPs)
chr8 (78-226)||(12587179-12587327)
chr8 (83-195)||(27323196-27323308)
chr8 (83-209)||(35036079-35036209)
chr8 (272-315)||(12587373-12587416)
chr8 (191-226)||(27324409-27324444)
[»] chr1 (2 HSPs)
chr1 (78-226)||(21880177-21880325)
chr1 (272-315)||(21880371-21880414)
[»] chr7 (2 HSPs)
chr7 (78-226)||(22970300-22970448)
chr7 (272-315)||(22970211-22970254)
[»] chr6 (3 HSPs)
chr6 (78-226)||(6901015-6901163)
chr6 (23-71)||(34225413-34225461)
chr6 (272-315)||(6900738-6900781)
[»] chr3 (2 HSPs)
chr3 (78-226)||(49602729-49602877)
chr3 (272-315)||(49602923-49602966)
[»] chr2 (1 HSPs)
chr2 (78-226)||(22329685-22329832)
[»] chr5 (2 HSPs)
chr5 (97-208)||(35360367-35360477)
chr5 (83-128)||(3497353-3497398)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 12587179 - 12587327
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587179 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 12587278  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587279 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 12587327  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 27323196 - 27323308
Alignment:
Q  83 acacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatcaacata 182  Q
    |||||||||||||||||||| ||| |||||| |||||| ||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  27323196 acacttaaagcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacata 27323295  T
Q  183 aattcaatatcaa 195  Q
    |||||||||||||    
T  27323296 aattcaatatcaa 27323308  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 35036209 - 35036079
Alignment:
Q  83 acacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcactta----tcaaaccctaacaataaagtttacacaatcaa 178  Q
    |||||||||| ||||||||||  | |||||| | ||| ||||||||||| |||| || ||||||    | |||||||||||||||||||||||| |||||    
T  35036209 acacttaaaggaataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaa 35036110  T
Q  179 cataaattcaatatcaacaaggtaataatag 209  Q
    |||||||||||||||||||| ||||||||||    
T  35036109 cataaattcaatatcaacaaagtaataatag 35036079  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 12587373 - 12587416
Alignment:
Q  272 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 315  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  12587373 ggaagagagtgtacctcttagatcaccatgaatggaggaagaga 12587416  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 27324409 - 27324444
Alignment:
Q  191 atcaacaaggtaataatagatgttaactctcattac 226  Q
    ||||||||||| ||||||||||||||||||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcattac 27324444  T

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Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 21880177 - 21880325
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  21880177 cacaaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatca 21880276  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21880277 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 21880325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 21880371 - 21880414
Alignment:
Q  272 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  21880371 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 21880414  T

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Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 22970448 - 22970300
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  22970448 cacatacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatca 22970349  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22970348 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 22970300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 22970254 - 22970211
Alignment:
Q  272 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22970254 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 22970211  T

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Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 6901163 - 6901015
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6901163 cacaaacacttaaagcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatca 6901064  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901063 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 6901015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 34225461 - 34225413
Alignment:
Q  23 atcatcacacaaataagagagagaaaaacaaactcactttacaactgag 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34225461 atcatcacacaaataagagagagaaaaacaaactcactttacaactgag 34225413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 6900781 - 6900738
Alignment:
Q  272 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 315  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  6900781 ggaagagagtgcacctcttagatcaccaccaatggaggaagaga 6900738  T

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Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 49602729 - 49602877
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  49602729 cacaaacacttaaagcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatca 49602828  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49602829 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 49602877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 49602923 - 49602966
Alignment:
Q  272 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49602923 ggaagagagtgtacctcttagatcaccaccaatggaggaagaga 49602966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 22329685 - 22329832
Alignment:
Q  78 cacagacacttaaagcaataaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 177  Q
    |||| |||||||||| ||||||||||||| ||| || ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22329685 cacaaacacttaaagtaataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 22329783  T
Q  178 acataaattcaatatcaacaaggtaataatagatgttaactctcattac 226  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22329784 acataaattcaatatcaacaacttaataatagatgttaactctcattac 22329832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 35360367 - 35360477
Alignment:
Q  97 aaaatagcagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaac 196  Q
    |||||| ||| ||||||||| |||||||||||||  ||||||| |||| || |||||||||||||||||||  ||| ||||||| || || ||||||  |    
T  35360367 aaaataacagcaaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggc 35360465  T
Q  197 aaggtaataata 208  Q
    ||||||||||||    
T  35360466 aaggtaataata 35360477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 3497353 - 3497398
Alignment:
Q  83 acacttaaagcaataaaatagcagtaaagtttaagattgttgaata 128  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||    
T  3497353 acacttaaagcaataaaatagtcgtaaagttcaagattgttgaata 3497398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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