View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_25 (Length: 352)
Name: NF1153_low_25
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 21440740 - 21440410
Alignment:
| Q |
1 |
attgtgatgtgaatctcatagtaagtagcagtgttgtcaatcgtgtggagactagcagtttgttcaaatttcactacactacagaagaaattctgctacg |
100 |
Q |
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| T |
21440740 |
attgtgatgtgaatctcatagtaagtagcagtgttgtcaatcgtgtggagactagcagtttgttcaaatttcactacactacagaagaaattctgctacg |
21440641 |
T |
|
| Q |
101 |
ttacagtgctatagcaccgatattcaaaatccactagtcaaattga---------ttgtgtgttctctggttttattttggccagggaatattcatgtat |
191 |
Q |
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| T |
21440640 |
ttacactgctatagcaccgctattcaaaatccactagtcaaattgatttttgtgtttttgtgttctctggttttattttggccagggaatattcatgtat |
21440541 |
T |
|
| Q |
192 |
atgctctgtagcaccgacacgtatgatcaaagacgtgttcaatgtctgagatcgacacatcgcacatgtgattatattcgattatgtcannnnnnnncaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |
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| T |
21440540 |
atgctctgtagcaccgacacgtatgatcaaagacgtgttcaatgtctgagatcgacacatcacacatgtgattatattcgatcatgtca-tttttttcaa |
21440442 |
T |
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| Q |
292 |
attatcatgggtgtgtatgtgtcagtgtcaat |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
21440441 |
attatcatgggtgtgtatgtgtcagtgtcaat |
21440410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 21440077 - 21439963
Alignment:
| Q |
33 |
gttgtcaatcgtgtggagactagcagtttgttcaaatttcactacactacagaagaaattctgctacgttacagtgctatagcaccgatattcaaaatcc |
132 |
Q |
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| T |
21440077 |
gttgtcaattgtgtgg-gagtagcagtttgttctaattccgctacactacacaaaaaattctgctatgctacagcactatggtgccactattcaaatttc |
21439979 |
T |
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| Q |
133 |
actagtcaaattgatt |
148 |
Q |
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| T |
21439978 |
actagtcaagttgatt |
21439963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 21441813 - 21441762
Alignment:
| Q |
175 |
agggaatattcatgtatatgctctgtagcaccgacacgtatgatcaaagacg |
226 |
Q |
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||||||||||||||||||||||| | | ||||||||||| |||| ||||||| |
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| T |
21441813 |
agggaatattcatgtatatgctcaggaacaccgacacgtttgattaaagacg |
21441762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 12742862 - 12742930
Alignment:
| Q |
74 |
ctacactacagaagaaattctgctacgttacagtgctatagcaccgatattcaaaatccactagtcaaa |
142 |
Q |
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| T |
12742862 |
ctacactacataacaaattctgctacactacaggactatagcgccactattcaaattccactagtcaaa |
12742930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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