View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_26 (Length: 352)
Name: NF1153_low_26
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 2567816 - 2567481
Alignment:
| Q |
13 |
aatatcaattaatctatctctagtaataaaagaagtctctcaccaacatgactctcaattatatggttttcacgtcggctcgatcctttaagcttgattt |
112 |
Q |
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| T |
2567816 |
aatatcaattaatctatctctagtaataaaagaagtctctcaccaacatggctctctattatatggtttgcacgtcggctcgatcctttaagcttgattt |
2567717 |
T |
|
| Q |
113 |
cttatttcatcctaaaagttcctaggttatcctcatgcttcgaaactcttgtctgatctaatatttttccagcaacttaagtacaacattcatgggtaat |
212 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
2567716 |
cttatttcatcctaaaagttcttaggttatcctcatgcttcgaaactcttgtctggtcttatatttttccagcaacttaattacaacattcatgggtaat |
2567617 |
T |
|
| Q |
213 |
caagctgaaagttccctaggatattttggacatggagagtctcatactt--nnnnnnnnnnnnnnnntgatattttgtatcaattgtaagttaagaaaaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
2567616 |
caagctgaaagttccctaggatattttggacatggagagtctcatacttgagagagagagagagagatgatattttgtatcaagtgtaagttaagaaaaa |
2567517 |
T |
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| Q |
311 |
attggatcctcgacagccaacttctctgctgcacta |
346 |
Q |
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||||||||||||||| ||||||||||| ||| |||| |
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| T |
2567516 |
attggatcctcgacaaccaacttctctactgtacta |
2567481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 29788894 - 29788861
Alignment:
| Q |
15 |
tatcaattaatctatctctagtaataaaagaagt |
48 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
29788894 |
tatcaattaatctatttctagtaataaaagaagt |
29788861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 15495810 - 15495862
Alignment:
| Q |
13 |
aatatcaattaatctatctctagtaataaaagaagtctctcaccaacatgact |
65 |
Q |
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||||||||||| | | ||| |||||||||||||||| |||| ||||||||||| |
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| T |
15495810 |
aatatcaattactatctctatagtaataaaagaagtgtctcgccaacatgact |
15495862 |
T |
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