View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_27 (Length: 351)
Name: NF1153_low_27
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 4175300 - 4175465
Alignment:
| Q |
26 |
aatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagcccatacat |
125 |
Q |
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| T |
4175300 |
aatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagcccatacat |
4175399 |
T |
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| Q |
126 |
ttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac |
191 |
Q |
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| T |
4175400 |
ttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac |
4175465 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
| Q |
209 |
ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta |
301 |
Q |
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| T |
4175751 |
ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta |
4175843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 4171340 - 4171423
Alignment:
| Q |
56 |
cagccaaggtttccaaaagtaccctcctctccactgcacgcaactcttggctgcacaatagccc--atacatttcataaatatt |
137 |
Q |
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| T |
4171340 |
cagccaaagtttccaaaagtactctcctctccactgcacgcacctcttggctgcacaataccccttatgcatttcataaatatt |
4171423 |
T |
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