View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_28 (Length: 349)
Name: NF1153_low_28
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 39952260 - 39952048
Alignment:
| Q |
48 |
cacccaccttagttgaattgaacaagaacaaaagcagagagcggtagaacaagtagaagtgcagtttctgtttggttttgaatgtgtttgttttatttga |
147 |
Q |
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| T |
39952260 |
cacccaccttagttgaattgaacaagaacaaaagcagagagcggtagaacaagtagaagtgcagtttctgtttggttttgaatgtgtttgttttatttga |
39952161 |
T |
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| Q |
148 |
gagggctcaacctgtgatgttgtgacacgtgtgtttgatattgacagtacctatatcctcgagctaaatgccaatagaatagaatagtcactcatcagtt |
247 |
Q |
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| T |
39952160 |
gagggctcaacctgtgatgttgtgacacgtgtgtttgatattgacagtacctatatcctcgagctaaatgccaatagaatagaatagtcattcatcagtt |
39952061 |
T |
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| Q |
248 |
actagactagaga |
260 |
Q |
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|||||| |||||| |
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| T |
39952060 |
actagaatagaga |
39952048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 39952001 - 39951914
Alignment:
| Q |
253 |
actagagaacaaaggtttcaaattctaaaggagggaaaaaatgcatgttttgtggaatgggattagtattgatttatagtagaataat |
340 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952001 |
actacagaacaaaggtttcaaattctaaaggagggaaaaaatgcatgttttgtggaatgggattagtattgatttatagtagaataat |
39951914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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