View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_30 (Length: 348)
Name: NF1153_low_30
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 4387543 - 4387232
Alignment:
| Q |
30 |
ggtagagcattttattcttaatctgtacagttttcttggtaaacaatgagaatggtgttactaagatgaaactgaattcctatcaggacaacacttgata |
129 |
Q |
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| T |
4387543 |
ggtagagcattttattcttaatctgtacagttttcatggtaaacaatgagaatggtgttactaagatgaaactgaattcctatcaggacaacacttgata |
4387444 |
T |
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| Q |
130 |
taactctattggacttgctgttatttacagtttcatgct---agtataaatactgttgtaatagaatctagtagtataaattcttttatctaacgtgcat |
226 |
Q |
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| T |
4387443 |
taactctattggacttgctgttatttacagtttcatgctagtagtataaatactgttgtaatagaatctagtagtataaattcttctatctaacgtgcat |
4387344 |
T |
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| Q |
227 |
gtttggattggtggttagtttgacggaattgtggcaggattaccatgattttggcaaaaactacaatttggcnnnnnnntcatgttgccaccttgatttc |
326 |
Q |
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| T |
4387343 |
gtttggattggtggttagtttgacggaattgtggcaggattaccatgattttggcataaactacaatttggcaaaaaaatcatgtcgccaccttgatttc |
4387244 |
T |
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| Q |
327 |
ttccccttcatc |
338 |
Q |
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||||||| |||| |
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| T |
4387243 |
ttcccctgcatc |
4387232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 4375259 - 4375137
Alignment:
| Q |
170 |
gtataaatactgttgtaatagaatctagtagtataaattcttttatctaacgtgcatgtttggattggtggttagtttgacggaattgtggcaggattac |
269 |
Q |
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|||||| |||||||||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||| |||| ||| | |
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| T |
4375259 |
gtataattactgttgtaatagaagctagtagtataaatacttctatctaagatgcatgttcggattggtggttagtttgacggaatctcggca-gatcat |
4375161 |
T |
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| Q |
270 |
catgattttggcaaaaactacaat |
293 |
Q |
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| T |
4375160 |
cgtgattttggcaaaaactacaat |
4375137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 4375368 - 4375265
Alignment:
| Q |
35 |
agcattttattcttaatctgtacagttttcttggtaaacaatgagaatggtgttactaagatgaaactgaattcctatcaggacaacac--ttgatataa |
132 |
Q |
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||||||||||||| |||||||| | ||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||| | ||| ||||||||| |
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| T |
4375368 |
agcattttattctgaatctgtataattttcaagataaacaatgagaataatgttactaagatgaagctgaattcctatcaggataccacttttgatataa |
4375269 |
T |
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| Q |
133 |
ctct |
136 |
Q |
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|||| |
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| T |
4375268 |
ctct |
4375265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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