View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_31 (Length: 346)
Name: NF1153_low_31
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 21441424 - 21441760
Alignment:
| Q |
1 |
cattctcgttcaacgtaagagacacatacactatgaaacattgacacatacacgaacac------caaacatgacat-----tgtcgtcaatgccggtaa |
89 |
Q |
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| T |
21441424 |
cattctcgttcagcgtaagagacacatacactatgaaacattgacacattcacgaacacaaacaccaaacatgacattacattgtcgtcaatgccggtaa |
21441523 |
T |
|
| Q |
90 |
taatttttataaaaatgacatgattaaatgtaaccatacgttctggtttcggacattgaagattgaacacatttgatgagacatgtcggtgatagagagt |
189 |
Q |
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| T |
21441524 |
taatttttataaaaatgacataattaaatgtaaccacacgttctggtttcggacattgaagattgaacacatttgatgagacatgtcggtgatagagagc |
21441623 |
T |
|
| Q |
190 |
atatacatgaattaagcttaaaatacatacaatcacaaacacgacatttacactgatactgatacgtccacactcggaataatatgnnnnnnntgacgta |
289 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21441624 |
atatacatgaattaagcttaaaatacatacaatcatagacacgacatttacactgatactgatacgtccacactcggaataatatg-aaaaaatgacgta |
21441722 |
T |
|
| Q |
290 |
attgaatataatcacatatgtcattgttagacattaac |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21441723 |
attgaatataatcacatatgtcattgttagacattaac |
21441760 |
T |
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