View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_33 (Length: 333)
Name: NF1153_low_33
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7657173 - 7657408
Alignment:
| Q |
1 |
caaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagcagcttcagcaacagttacaa |
100 |
Q |
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| T |
7657173 |
caaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtagccaacaaggacaaaatcctcaacaacagcagcttcagcaacagttacaa |
7657272 |
T |
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| Q |
101 |
cagctgcaacaacttcaacatattaagggatttggaggtctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaatacaa |
200 |
Q |
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| T |
7657273 |
cagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaatacaa |
7657372 |
T |
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| Q |
201 |
atatgaaaggtgttaagttcaatttgcctgaagagt |
236 |
Q |
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| T |
7657373 |
atatgaaaggtgttaagttcaatttgcctgaagagt |
7657408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 7651868 - 7652006
Alignment:
| Q |
97 |
acaacagctgcaacaacttcaacatattaagggatttggaggtctgaaggtgcctcaattcaaggacatgaacatgaaaatgccaccaccaaatcaaaat |
196 |
Q |
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| T |
7651868 |
acaacagcttcaacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacatgatgatgccaccaccaaatcaaaat |
7651967 |
T |
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| Q |
197 |
acaaatatgaaaggtgttaagttcaatttgcctgaagag |
235 |
Q |
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| T |
7651968 |
ccaaatatgaaaggtgttaaggtcaatttgcctaaagag |
7652006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 7651800 - 7651875
Alignment:
| Q |
5 |
gggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagc |
80 |
Q |
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| T |
7651800 |
gggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaacaacagc |
7651875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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