View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_34 (Length: 328)
Name: NF1153_low_34
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 40188105 - 40188419
Alignment:
| Q |
1 |
ttttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagata |
100 |
Q |
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| T |
40188105 |
ttttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagata |
40188204 |
T |
|
| Q |
101 |
tatttcattacattgttggttagatacttagatatggtatgattagtatatgattgagttgcattgcttctagacatattttccttgttattttgttatc |
200 |
Q |
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| T |
40188205 |
tatttcattacattgtttgttagatacttagatatggtatgattagtatatgattgagttgcattgcttctagacatattttccttgttattttgttatc |
40188304 |
T |
|
| Q |
201 |
ttgtgagagaaaatatgaagagaatggaaaacaatgatgatagtgttgacattaacaatgaaaataactggttaggtttttcactctctcctcaaatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40188305 |
ttgtgagagaaaatatgaagagaatggaaaacaatgatgatagtgttgacattaacaatgaaaataactggttaggtttttcactctctcctcaaatgaa |
40188404 |
T |
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| Q |
301 |
taatattggtgtttc |
315 |
Q |
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||||||||||||||| |
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| T |
40188405 |
taatattggtgtttc |
40188419 |
T |
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