View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_low_36 (Length: 313)
Name: NF1153_low_36
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 51729352 - 51729076
Alignment:
| Q |
8 |
cgaataatatcatatagtaaggaatacagcattgaacnnnnnnntattctgttatggctgctaaatgtatagctaattgtttcttgatgtgcaatctaaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729352 |
cgaatcatatcatatagtaaggaatacaacattgaacaaataaatattctgttataggtgctaaatgtatagctaattgtttcttgatgtgcaatctaaa |
51729253 |
T |
|
| Q |
108 |
atagaggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729252 |
atagaggcttggcatttcaaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggat |
51729153 |
T |
|
| Q |
208 |
tatgcatcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729152 |
tatgcatcatgtcaaatggctataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaa |
51729076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 241
Target Start/End: Original strand, 19056564 - 19056695
Alignment:
| Q |
110 |
agaggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggatta |
209 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| |
|
|
| T |
19056564 |
agaggcttgtgatttcaaagttcatagagtcctacttgctttggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattt |
19056663 |
T |
|
| Q |
210 |
tgcatcatgtcaaatggctataatgccagaaa |
241 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||| |
|
|
| T |
19056664 |
tgcatcttgtcaaatagctataacaccagaaa |
19056695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 241
Target Start/End: Complemental strand, 19188635 - 19188504
Alignment:
| Q |
110 |
agaggcttggcatttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggatta |
209 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||| | || |||||| ||||||| |||||||||| || ||||||||||||||||||| ||| |||| |
|
|
| T |
19188635 |
agaggcttgtgatttcaaagttcatagagtcctacttgctatggaaacttccattagagaagtatgggttgaaaccagaacacccttttgaggaagattt |
19188536 |
T |
|
| Q |
210 |
tgcatcatgtcaaatggctataatgccagaaa |
241 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||| |
|
|
| T |
19188535 |
tgcatcttgtcaaatagctataacaccagaaa |
19188504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 6895797 - 6895696
Alignment:
| Q |
121 |
atttcgaagttcattgagtcctaccttctgtggaaatttccattggagaagtatgatttaaaaccagaacacccttttgcggaggattatgcatcatgtc |
220 |
Q |
| |
|
||||| |||||||| ||||| ||| | || |||||| ||||||| ||||| |||| || || ||||| ||| | |||| ||||||||||||||| |||| |
|
|
| T |
6895797 |
atttcaaagttcatagagtcttacttgctttggaaacttccattagagaaatatggattgaagccagatcactcatttgaggaggattatgcatcttgtc |
6895698 |
T |
|
| Q |
221 |
aa |
222 |
Q |
| |
|
|| |
|
|
| T |
6895697 |
aa |
6895696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University