View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_37 (Length: 313)

Name: NF1153_low_37
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_37
NF1153_low_37
[»] chr8 (3 HSPs)
chr8 (1-169)||(32915251-32915419)
chr8 (181-284)||(32916032-32916135)
chr8 (56-145)||(24945367-24945456)
[»] chr3 (1 HSPs)
chr3 (6-145)||(9359347-9359486)
[»] chr1 (1 HSPs)
chr1 (13-151)||(2308149-2308287)
[»] scaffold0001 (1 HSPs)
scaffold0001 (57-141)||(520131-520215)
[»] chr4 (1 HSPs)
chr4 (54-149)||(51091110-51091205)
[»] chr2 (1 HSPs)
chr2 (99-145)||(41195215-41195261)
[»] chr7 (1 HSPs)
chr7 (86-151)||(43805405-43805470)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 32915251 - 32915419
Alignment:
Q  1 tattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915251 tattcagcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcct 32915350  T
Q  101 cgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915351 cgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacctttcaaattatctacttcctc 32915419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 32916032 - 32916135
Alignment:
Q  181 aagaggtgggggaaatggtggtggaaattaaggtattatcgtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 280  Q
    ||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32916032 aagaggtgggggaaatggtggaggatattaagttattatggtggaattgcaactattttgtttatggggttgttagtggcagcttattgtttttgaggtg 32916131  T
Q  281 cttg 284  Q
    ||||    
T  32916132 cttg 32916135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 24945456 - 24945367
Alignment:
Q  56 atcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 145  Q
    ||||||||||| |||||||||||| || |||||  ||||||| || ||||||||||| | ||||||||||||||||||||| ||||||||    
T  24945456 atcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaa 24945367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 9359347 - 9359486
Alignment:
Q  6 agcctacacaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgctt 105  Q
    |||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||||| || || |||| ||||||||| ||||    
T  9359347 agcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagctt 9359446  T
Q  106 gccaaatagcccaaatagttgcatgccaaatgatccacaa 145  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9359447 gccaaatagcccaaatagttgcatgccaaataatccacaa 9359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2308287 - 2308149
Alignment:
Q  13 acaaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaat 112  Q
    |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||||| | ||||||||| | |||||| |||| |||||||||||||||||    
T  2308287 acaaactccacctccatgaatttaccacaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaat 2308188  T
Q  113 agcccaaatagttgcatgccaaatgatccacaaaccttt 151  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  2308187 agcccatatagttgcatgccaaatgatccacaaaccttt 2308149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 520131 - 520215
Alignment:
Q  57 tcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatcc 141  Q
    |||||||||  |||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||| |||||| ||||    
T  520131 tcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatcc 520215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 51091205 - 51091110
Alignment:
Q  54 agatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaacct 149  Q
    ||||| ||||||| |||||| ||||| |||||||| |  ||||||||  |||||||||   || ||||||||||||||||||| ||||| ||||||    
T  51091205 agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacct 51091110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 41195215 - 41195261
Alignment:
Q  99 ctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaa 145  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  41195215 ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 43805470 - 43805405
Alignment:
Q  86 aatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt 151  Q
    |||||||||||| ||| ||||||| ||| || ||| ||||||||||||||| ||||| ||||||||    
T  43805470 aatcaaatgatttctcacttgccagataccctaaagagttgcatgccaaataatccataaaccttt 43805405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University