View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_38 (Length: 313)
Name: NF1153_low_38
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_38 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 32915275 - 32914973
Alignment:
| Q |
1 |
cggtggagtttgtgtaggctgaatatacaaacatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagtagctaattggggtgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915275 |
cggtggagtttgtgtaggctgaatatacaagcatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagtagctaattggggtgt |
32915176 |
T |
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| Q |
101 |
agtgacagtactggtgagtctgtcgagattttcttctcacgtgaagtaactggcggtgcttttgggcttgtgtaccggctgtgagtttttaggagcgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915175 |
agtgacagtactggtgagtctgtcgagattttcttctcacgtgaagtaactggcggtgcttttgggcttgtgtaccggctgtgagtttttaggagcgcat |
32915076 |
T |
|
| Q |
201 |
attacagatgcacagttctagctggatggttttgaggcttcggtatgcagtgatggagtacataggatcaattgtataggcagtgcttaagggctgttct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32915075 |
attacagatgcacagttctagctggatggttttgaggcttcggtatgcagtgatgaagtacataggatcaattgtataggcagtgcttaagggctgttct |
32914976 |
T |
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| Q |
301 |
gtg |
303 |
Q |
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||| |
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| T |
32914975 |
gtg |
32914973 |
T |
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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 2308276 - 2308361
Alignment:
| Q |
2 |
ggtggagtttgtgtaggctgaatatacaaacatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagtag |
87 |
Q |
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| T |
2308276 |
ggtggagtttgtctagacttaatatgcaaacctgtctatattatgaatggaattggaatcctcaagaatgtctaacgaggaagtag |
2308361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9359366 - 9359281
Alignment:
| Q |
1 |
cggtggagtttgtgtaggctgaatatacaaacatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagta |
86 |
Q |
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||||||||||||| |||||| |||| |||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
9359366 |
cggtggagtttgtataggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtctattaaggaagta |
9359281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43805531 - 43805617
Alignment:
| Q |
1 |
cggtggagtttgtgtaggctgaatatacaaacatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagtag |
87 |
Q |
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||||||||||||| |||||| ||||| ||||| ||||||| ||||||||| | ||||||||||||||| || || | |||||||||| |
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| T |
43805531 |
cggtggagtttgtataggcttaatatgcaaacttgtttatattatgaatgaagttggaatcctcaagagtgccttttgaggaagtag |
43805617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 520057 - 520028
Alignment:
| Q |
43 |
tatgaatggaattggaatcctcaagaatgt |
72 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
520057 |
tatgaatggaattggaatcctcaagaatgt |
520028 |
T |
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