View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_39 (Length: 312)
Name: NF1153_low_39
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 34873466 - 34873213
Alignment:
| Q |
53 |
ctgtaggacatggtaaatag--cacacacatagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacaccctcct---taacatacatatctt |
147 |
Q |
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| T |
34873466 |
ctgtaggacatggtaaatagtgcacacacataattaaaaattttaataaaagaactcgtgatgcatatgtagacaccctcctaattaacatacatagctt |
34873367 |
T |
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| Q |
148 |
caagatttacagtaagaatatgttctgtgtcgataatacttggtatttagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaat |
247 |
Q |
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| T |
34873366 |
caagatttacaataagaatatgttctgtgtcgataatacttggtatttagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaat |
34873267 |
T |
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| Q |
248 |
atgaaatagatacatgacttacatgtttactcagtgcattggaacagttttcat |
301 |
Q |
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| T |
34873266 |
atgaaatagatacatgacttacatgtttactcagtgcattggaacatttttcat |
34873213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 9919035 - 9919137
Alignment:
| Q |
200 |
aatcctaattttatttttcaatgttaaatggccttatcgagtt-aaaatatgaaatagatacatgacttacatgtttactcagtgcattggaacagtttt |
298 |
Q |
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| T |
9919035 |
aatcctaattttatttttcaatgttaaatggccatgtcgagttaaaaatatgaaacagatgcaagattaacatgtttccttagtgcattggaacaatttt |
9919134 |
T |
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| Q |
299 |
cat |
301 |
Q |
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||| |
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| T |
9919135 |
cat |
9919137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 34874950 - 34874885
Alignment:
| Q |
205 |
taattttatttttcaatgttaaatggccttatcgagttaaaatatgaaatagatacatgacttacatgttt |
275 |
Q |
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| T |
34874950 |
taattttatttttcaatgttaaatgacc-----gagttaaaatatgaaacagatacatgactaacatgttt |
34874885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 34872162 - 34872233
Alignment:
| Q |
57 |
aggacatggtaaatagcacacaca--tagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacac |
126 |
Q |
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|||||| ||||||||||||||||| || || |||| ||||| |||||||||| |||||||||||||||||| |
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| T |
34872162 |
aggacacggtaaatagcacacacacataattgaaaattttaggaaaagaactcatgatgcatatgtagacac |
34872233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 9918905 - 9919019
Alignment:
| Q |
87 |
aaaaatttagtaaaagaactcgtgatgcatatgtagacaccctccttaacat--acatatcttcaagatttacagtaaga-atatgttctgtgtcgataa |
183 |
Q |
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|||||||||| ||||||||| | || ||||| ||||||||||||||||| ||||| |||||||||||||| || || | |||||||||||| |||| |
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| T |
9918905 |
aaaaatttaggaaaagaactgattat--atatgaagacaccctccttaacactcacatagcttcaagatttacaatatgatacatgttctgtgtcaataa |
9919002 |
T |
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| Q |
184 |
tacttggtatttagaaa |
200 |
Q |
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|||| |||||| ||||| |
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| T |
9919003 |
tactcggtattcagaaa |
9919019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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