View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_low_4 (Length: 549)
Name: NF1153_low_4
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 39574632 - 39575138
Alignment:
| Q |
30 |
ttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39574632 |
ttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaa |
39574731 |
T |
|
| Q |
130 |
agtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattcttgtcaagc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
39574732 |
agtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcgtcaagc |
39574831 |
T |
|
| Q |
230 |
aatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39574832 |
aatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcc |
39574931 |
T |
|
| Q |
330 |
tttgcttccaagtcaaacaaggcaaatttgtattgtacaaattctctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39574932 |
tttgcttccaagtcaaacaaggcaaatttgtatcgtacaaattatctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttc |
39575031 |
T |
|
| Q |
430 |
atcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacccgaacctggc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39575032 |
atcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacctgaacctggc |
39575131 |
T |
|
| Q |
530 |
acgcttc |
536 |
Q |
| |
|
||||||| |
|
|
| T |
39575132 |
acgcttc |
39575138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 39542797 - 39543303
Alignment:
| Q |
30 |
ttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaa |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
39542797 |
ttgcgcacaacacctcaagtagaaccaccccaaaagaataaacatcagatttttctgtaagctgttgtgctctaaagtaatcaggatcaagatacccaaa |
39542896 |
T |
|
| Q |
130 |
agtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattcttgtcaagc |
229 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39542897 |
agtccctttaacacgtgtgctgacataagaatgttcatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcatcaagc |
39542996 |
T |
|
| Q |
230 |
aatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcc |
329 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39542997 |
aatatattagtggatttcacgtcacggtgaattattccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcc |
39543096 |
T |
|
| Q |
330 |
tttgcttccaagtcaaacaaggcaaatttgtattgtacaaattctctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttc |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39543097 |
tttgcttccaagtcaaacaaggcaaatttgtattgtataaattctccctaagtgtaccattttccatgtactcataaacaagtatcatctcacacctttc |
39543196 |
T |
|
| Q |
430 |
atcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacccgaacctggc |
529 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
39543197 |
atcacaataccctattaaggaaacaaggtgtttgtgacgaatcttggacagaaccattatctcagtttgaaattcatgttgtccttgacctgaacccggc |
39543296 |
T |
|
| Q |
530 |
acgcttc |
536 |
Q |
| |
|
|| |||| |
|
|
| T |
39543297 |
acacttc |
39543303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 536
Target Start/End: Original strand, 39579165 - 39579674
Alignment:
| Q |
30 |
ttgcgcacaacacttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
39579165 |
ttgcgcacaacacttcaagtagaaccaccccaaaagaataaacatcggatttttctgtaaggtgtagtgatctaaagtaatcaggatcaagatacccaaa |
39579264 |
T |
|
| Q |
130 |
agtccctttaacacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattcttgtcaagc |
229 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
39579265 |
agtccctttaacacctgtgctcacataagaatgttgatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaacaagattctcatcaagc |
39579364 |
T |
|
| Q |
230 |
aatatattagtggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39579365 |
aatatattagtggatttcacatcacggtggattattccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcc |
39579464 |
T |
|
| Q |
330 |
tttgcttccaagtc---aaacaaggcaaatttgtattgtacaaattctctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacct |
426 |
Q |
| |
|
|||||||||||||| |||| ||||||| || ||||||||||||||||| |||||||||| |||||||| || || |||||||||||||||||| ||| |
|
|
| T |
39579465 |
tttgcttccaagtcaaaaaactaggcaaacttttattgtacaaattctctttaagtgtccctttttccatatattcataaacaagtatcatctcataccc |
39579564 |
T |
|
| Q |
427 |
ttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacccgaacct |
526 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||| || || |
|
|
| T |
39579565 |
ttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagcttcaaattcaggaagtccttgacctgacccc |
39579664 |
T |
|
| Q |
527 |
ggcacgcttc |
536 |
Q |
| |
|
||||| |||| |
|
|
| T |
39579665 |
ggcacccttc |
39579674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 41 - 529
Target Start/End: Original strand, 39509743 - 39510234
Alignment:
| Q |
41 |
acttcaagtagaaccaccccaaaagagtaaacatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaaagtccctttaa |
140 |
Q |
| |
|
||||||||||||||||| || || || || ||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| || |||| |
|
|
| T |
39509743 |
acttcaagtagaaccacgccgaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaa |
39509842 |
T |
|
| Q |
141 |
cacatgtgctgacataagaatgttgatcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattcttgtcaagcaatatattagt |
240 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
39509843 |
cacctgtgctgacataagaatgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagt |
39509942 |
T |
|
| Q |
241 |
ggatttcacatcacggtggattattccaccggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttccaa |
340 |
Q |
| |
|
||| |||||||| ||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39509943 |
ggacttcacatcgcggtgaatgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaa |
39510042 |
T |
|
| Q |
341 |
gtc---aaacaaggcaaatttgtattgtacaaattctctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttcatcacaat |
437 |
Q |
| |
|
||| |||| ||||||||||| | |||||| | ||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
39510043 |
gtcaagaaactaggcaaatttgcaccttacaaactttctttaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaat |
39510142 |
T |
|
| Q |
438 |
atgcaattaaggaaacaaggtgtatgtgacgaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacccgaacctggc |
529 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| | |||||||||| || |||||| |
|
|
| T |
39510143 |
acccaattaaggaaacaaggtgtcgatgacgaatctttgacaaaaccattatctcagtctgaaattcaggtagtccttgacctgaccctggc |
39510234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 377 - 505
Target Start/End: Original strand, 39520340 - 39520468
Alignment:
| Q |
377 |
ctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatcttgg |
476 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||||||| |
|
|
| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
477 |
acaaaaccattatctcagtttgaaattca |
505 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
39520440 |
acaaaaccattatctcagtctgaaattca |
39520468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 46271722 - 46271665
Alignment:
| Q |
282 |
tgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttcca |
339 |
Q |
| |
|
||||||| || || ||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
46271722 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttcca |
46271665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 35904669 - 35904726
Alignment:
| Q |
282 |
tgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttcca |
339 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 27539484 - 27539427
Alignment:
| Q |
282 |
tgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttcca |
339 |
Q |
| |
|
||||||| || || ||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
27539484 |
tgtgaagatagtgtagacctcgagcagctccaatgcatatctcaagcctttgcttcca |
27539427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 41044293 - 41044341
Alignment:
| Q |
282 |
tgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcct |
330 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||| ||||||||||| |
|
|
| T |
41044293 |
tgtgaaggtaatgaagtcctttagcagatccaatgcatatctcaagcct |
41044341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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