View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_47 (Length: 288)

Name: NF1153_low_47
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_47
NF1153_low_47
[»] chr2 (3 HSPs)
chr2 (13-288)||(6298570-6298845)
chr2 (205-253)||(35077223-35077271)
chr2 (205-253)||(35080481-35080529)
[»] scaffold0884 (1 HSPs)
scaffold0884 (205-253)||(4289-4337)
[»] scaffold0086 (1 HSPs)
scaffold0086 (209-253)||(24251-24295)
[»] chr7 (2 HSPs)
chr7 (205-253)||(1636692-1636740)
chr7 (205-253)||(44672787-44672835)
[»] chr5 (1 HSPs)
chr5 (205-253)||(22036165-22036213)
[»] chr3 (1 HSPs)
chr3 (205-253)||(10557802-10557850)
[»] chr1 (2 HSPs)
chr1 (205-253)||(28138603-28138651)
chr1 (205-253)||(28141853-28141901)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 6298570 - 6298845
Alignment:
Q  13 aatattagcaagaggaatcaaaagacgtgatccgattcttctattattttcacaacactttttacaagtttatttattttacaattgtaaaaccaaatta 112  Q
    ||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6298570 aatattaaccagaggaatcgaaagacgtgatcctattcttctattattttcacaacactttttacaagtttatttattttacaattgtaaaaccaaatta 6298669  T
Q  113 tttgcgatgtgcacccccaaatttttatgacatccatgataatgactattttgttgagtagaaattaagcggtctatgtggatacgatcttaaaatatta 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  6298670 tttgcgatgtgcacccccaaatttttatgacatccataataatgactattttgttgagtagaaattaagcggtgtatgtggatacgatcttgaaatatta 6298769  T
Q  213 ttatttcgatataatttaatacacttgctaaatatctatcatagactaatccacttgttattggattgtaaaattt 288  Q
    ||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6298770 ttacttcgatataatttagtacacttgttaaatatctatcatagattaatccacttgttattggattgtaaaattt 6298845  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 35077223 - 35077271
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  35077223 aaattttattacttcgatataagttagtacacttgctaattatctatca 35077271  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 35080481 - 35080529
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  35080481 aaattttattacttcgatataagttagtacacttgctaattatctatca 35080529  T

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Target: scaffold0884 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 4337 - 4289
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  4337 aaattttattacttcgatataagttagtacacttgctaattatctatca 4289  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 24251 - 24295
Alignment:
Q  209 attattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    ||||||| |||||||||| |||||||||||||||| | |||||||    
T  24251 attattacttcgatataaattaatacacttgctaattttctatca 24295  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 1636740 - 1636692
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  1636740 aaattttattacttcgatataagttagtacacttgctaattatctatca 1636692  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 44672835 - 44672787
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  44672835 aaattttattacttcgatataagttagtacacttgctaattatctatca 44672787  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 22036165 - 22036213
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  22036165 aaattttattacttcgatataagttagtacacttgctaattatctatca 22036213  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 10557850 - 10557802
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  10557850 aaattttattacttcgatataagttagtacacttgctaattatctatca 10557802  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 28138651 - 28138603
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  28138651 aaattttattacttcgatataagttagtacacttgctaattatctatca 28138603  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 28141901 - 28141853
Alignment:
Q  205 aaatattattatttcgatataatttaatacacttgctaaatatctatca 253  Q
    |||| |||||| |||||||||| ||| |||||||||||| |||||||||    
T  28141901 aaattttattacttcgatataagttagtacacttgctaattatctatca 28141853  T

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