View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_5 (Length: 531)
Name: NF1153_low_5
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 313 - 438
Target Start/End: Original strand, 14546569 - 14546698
Alignment:
| Q |
313 |
tatcatgaaaagaagagcattgctgaggcttgaattgttgtatggctgtggtagaatgcagtagaaaaggttcaaaatttgcttgtaatg----gataac |
408 |
Q |
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| T |
14546569 |
tatcatgaaaagaagagcattgctgaggcttgaattgttgtatggctgtggtagaatgcagtagaaaaggttcaaaatttgtttgtgatggatagataac |
14546668 |
T |
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| Q |
409 |
attggaatggtacatgtacatcaacatgca |
438 |
Q |
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| T |
14546669 |
attggaatggtacatgtacatcaacatgca |
14546698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 201 - 315
Target Start/End: Original strand, 14546433 - 14546546
Alignment:
| Q |
201 |
aatgtcatagtgactttggttgtatcacggtgagccattgtgattttgcaaaatcatagtggtttgacatgatatcaaacatacaaattaaaatcaaatt |
300 |
Q |
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| T |
14546433 |
aatgtcataatgactttggttgtatcacggtgagccattgtgattttgcaaaatcatagtggtttgacatgatatcaaacatacaaatt-aaatcaaatt |
14546531 |
T |
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| Q |
301 |
gctgtgtgataatat |
315 |
Q |
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| T |
14546532 |
gttgtgtgataatat |
14546546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 14546274 - 14546419
Alignment:
| Q |
74 |
atactaacaatgtgttgaatattgcatgacttcttgtgggtttatc-tttttagtttctatgtaagtcaaggaaacatattttgcagtgaa-nnnnnnnn |
171 |
Q |
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| T |
14546274 |
atactaacaatgtgttgaatattgcatgacttcttgtgggtttatcttttttagtttctatgcaagtcaaggaaacaaattttgcagtgaattttttttt |
14546373 |
T |
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| Q |
172 |
ncaaaatgctattgttcatatttggtatcaatgtcatagtgacttt |
217 |
Q |
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| T |
14546374 |
tcaaaatgctattgttcatatttggtatcaatgtcataatgacttt |
14546419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 253
Target Start/End: Complemental strand, 48586919 - 48586888
Alignment:
| Q |
222 |
gtatcacggtgagccattgtgattttgcaaaa |
253 |
Q |
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| T |
48586919 |
gtatcacggtgagccattgtgattttgcaaaa |
48586888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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