View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_53 (Length: 279)
Name: NF1153_low_53
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 43584431 - 43584626
Alignment:
| Q |
80 |
gcaaatatattcaaacctaaatcattattttataatcaattcattattaaataaaatcaattttaccgaataaatttagtagaaatcaatttttgctatc |
179 |
Q |
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| T |
43584431 |
gcaaatatattcaaacctaaatcatt---ttataatcaattcattattaa-taaaatcaattttactaaataaatttagtagaaatcaatttttgctatc |
43584526 |
T |
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| Q |
180 |
acataaccaatcatgcactaagaatatgagaccaatatataatattactttaattgattgaaaagcctgaccctatggtttagacctaagctgtatattc |
279 |
Q |
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| T |
43584527 |
acataaccaatcatgcactaagaatatgagaccaatatataatattactttaattgattgaaaagcctgaccctatggtttagacctaagctgtatattc |
43584626 |
T |
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